View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5668-74 (Length: 134)
Name: Solexa-NF5668-74
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-74 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 73; Significance: 9e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 51273270 - 51273388
Alignment:
| Q |
7 |
agagaaaaagagaaaattcaaagagtagagaacttatgttgtattgttcaagtgcg-----ttcatacgaccgagtattttagaccaagtnnnnnnncac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
51273270 |
agagaaaaagagaaaattcaaagagtagagaacttaagttgtattgttcaagtgcgaataattcatacgaccgagtattttagaccaagt----aaacac |
51273365 |
T |
|
| Q |
102 |
gcatggaccagctcctagctagt |
124 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51273366 |
gcatggaccagctcctagctagt |
51273388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University