View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-76 (Length: 151)

Name: Solexa-NF5668-76
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-76
Solexa-NF5668-76
[»] chr2 (3 HSPs)
chr2 (8-147)||(8379416-8379555)
chr2 (114-147)||(23768332-23768365)
chr2 (114-147)||(23783706-23783739)
[»] chr1 (5 HSPs)
chr1 (8-64)||(43770111-43770167)
chr1 (24-64)||(1138573-1138613)
chr1 (20-64)||(7946838-7946882)
chr1 (24-64)||(15059565-15059605)
chr1 (24-64)||(47091684-47091724)
[»] chr7 (1 HSPs)
chr7 (8-60)||(1469114-1469166)
[»] chr5 (5 HSPs)
chr5 (24-64)||(1827693-1827733)
chr5 (24-64)||(12317313-12317353)
chr5 (24-64)||(25343233-25343273)
chr5 (24-64)||(27498894-27498934)
chr5 (36-67)||(12647731-12647762)
[»] chr4 (2 HSPs)
chr4 (32-64)||(22625241-22625273)
chr4 (24-64)||(52983613-52983653)
[»] chr3 (2 HSPs)
chr3 (24-64)||(4252559-4252599)
chr3 (32-67)||(40133620-40133655)
[»] scaffold0160 (1 HSPs)
scaffold0160 (8-47)||(29289-29328)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 8379416 - 8379555
Alignment:
Q  8 tgagatgaacagacttcaagatttcaagccaaccactagggcaacctcaaatgggttcaaaagatgcaatttttataggaaaaatacaagaagatacagc 107  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8379416 tgagatgaatagacttcaagatttcaagccaaccactaagtcaacctcaaatgggttcaaaagatgcaatttttaaaggaaaaatacaagaagatacagc 8379515  T
Q  108 taatacattaaaatacttacaatcttaagtttattgagtc 147  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  8379516 taatacattaaaatacttacaatcttaagtttatttagtc 8379555  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 23768365 - 23768332
Alignment:
Q  114 attaaaatacttacaatcttaagtttattgagtc 147  Q
    ||||||||||||||||||||||||||||| ||||    
T  23768365 attaaaatacttacaatcttaagtttatttagtc 23768332  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 23783706 - 23783739
Alignment:
Q  114 attaaaatacttacaatcttaagtttattgagtc 147  Q
    ||||||||||||||||||||||||||||| ||||    
T  23783706 attaaaatacttacaatcttaagtttatttagtc 23783739  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 43770111 - 43770167
Alignment:
Q  8 tgagatgaacagacttcaagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    ||||||||||| ||| |||||||||||||||||||||||  ||||| ||||||||||    
T  43770111 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 43770167  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 1138613 - 1138573
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  1138613 caagatctcaagccaaccactaggtcaaccccaaatgggtt 1138573  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 7946882 - 7946838
Alignment:
Q  20 acttcaagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||||||| ||||||||||||||||| | ||| ||||||||||    
T  7946882 acttcaagatctcaagccaaccactaggtcgaccccaaatgggtt 7946838  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 15059565 - 15059605
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    ||||||| |||||||||||||||| ||||| ||||||||||    
T  15059565 caagattccaagccaaccactaggccaaccccaaatgggtt 15059605  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 47091724 - 47091684
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  47091724 caagatctcaagccaaccactaggccaaccccaaatgggtt 47091684  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1469166 - 1469114
Alignment:
Q  8 tgagatgaacagacttcaagatttcaagccaaccactagggcaacctcaaatg 60  Q
    ||||||||||| ||| |||||||||||| ||||||||||| ||||| ||||||    
T  1469166 tgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1827693 - 1827733
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  1827693 caagatctcaagccaaccactaggtcaaccccaaatgggtt 1827733  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 12317313 - 12317353
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    ||||||| |||||||||||||||| ||||| ||||||||||    
T  12317313 caagattccaagccaaccactaggccaaccccaaatgggtt 12317353  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 25343273 - 25343233
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||||||||| ||||||||||| ||||| ||||||||||    
T  25343273 caagatttcaagtcaaccactaggccaaccccaaatgggtt 25343233  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 27498894 - 27498934
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    ||||||| |||||||||||||||| ||||| ||||||||||    
T  27498894 caagattccaagccaaccactaggtcaaccccaaatgggtt 27498934  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 67
Target Start/End: Complemental strand, 12647762 - 12647731
Alignment:
Q  36 ccaaccactagggcaacctcaaatgggttcaa 67  Q
    |||||||||||| |||||||||||||||||||    
T  12647762 ccaaccactaggtcaacctcaaatgggttcaa 12647731  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 22625241 - 22625273
Alignment:
Q  32 caagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||||||||||||| ||||||||||||||||    
T  22625241 caagccaaccactaggccaacctcaaatgggtt 22625273  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 52983653 - 52983613
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  52983653 caagatctcaagccaaccactaggccaaccccaaatgggtt 52983613  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 4252559 - 4252599
Alignment:
Q  24 caagatttcaagccaaccactagggcaacctcaaatgggtt 64  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  4252559 caagatctcaagccaaccactaggccaaccccaaatgggtt 4252599  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 40133620 - 40133655
Alignment:
Q  32 caagccaaccactagggcaacctcaaatgggttcaa 67  Q
    |||||||||||||||| ||||| |||||||||||||    
T  40133620 caagccaaccactaggccaaccccaaatgggttcaa 40133655  T

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Target: scaffold0160 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 29289 - 29328
Alignment:
Q  8 tgagatgaacagacttcaagatttcaagccaaccactagg 47  Q
    ||||| ||||| ||||||||||| ||||||||||||||||    
T  29289 tgagaggaacacacttcaagattccaagccaaccactagg 29328  T

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