View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-79 (Length: 148)
Name: Solexa-NF5668-79
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-79 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 8e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 8e-47
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 38863284 - 38863378
Alignment:
| Q |
54 |
actacaactatgcataactaacatatatcaacatgcatgttgtcttataatgatgaacaaattgatcaacatgcattatatcttcatctaggatc |
148 |
Q |
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| T |
38863284 |
actacaactatgcataactaacatatatcaacatgcatgttgtcttataatgatgaacaaattgatcaacatgcattatatcttcatctaggatc |
38863378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 38863240 - 38863274
Alignment:
| Q |
4 |
cacagacgacaacggttagttgaacagctagctag |
38 |
Q |
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| T |
38863240 |
cacagacgacaacggttagttgaacagctagctag |
38863274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 38842741 - 38842781
Alignment:
| Q |
89 |
catgttgtcttataatgatgaacaaattgatcaacatgcat |
129 |
Q |
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| T |
38842741 |
catgttgtcttataatgatataaaaattgatcaacatgcat |
38842781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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