View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5668-8 (Length: 94)

Name: Solexa-NF5668-8
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5668-8
Solexa-NF5668-8
[»] chr3 (22 HSPs)
chr3 (8-72)||(10376258-10376322)
chr3 (8-72)||(10580193-10580257)
chr3 (8-72)||(9838453-9838517)
chr3 (8-72)||(9849331-9849395)
chr3 (8-72)||(10076858-10076922)
chr3 (8-72)||(10088382-10088446)
chr3 (9-72)||(10434458-10434521)
chr3 (8-72)||(10195265-10195329)
chr3 (8-72)||(10364211-10364275)
chr3 (17-72)||(8860878-8860933)
chr3 (8-72)||(11131439-11131503)
chr3 (8-72)||(11149267-11149331)
chr3 (7-71)||(13160573-13160637)
chr3 (7-71)||(13289258-13289322)
chr3 (7-71)||(13332497-13332561)
chr3 (8-69)||(10126511-10126572)
chr3 (8-69)||(10260281-10260342)
chr3 (8-72)||(11160430-11160494)
chr3 (8-72)||(11768826-11768890)
chr3 (7-71)||(13170624-13170688)
chr3 (7-71)||(13343682-13343746)
chr3 (26-69)||(10031586-10031629)
[»] scaffold0083 (1 HSPs)
scaffold0083 (8-72)||(50218-50282)
[»] chr2 (1 HSPs)
chr2 (8-72)||(26906489-26906553)
[»] chr8 (1 HSPs)
chr8 (8-72)||(11484609-11484673)
[»] scaffold0002 (2 HSPs)
scaffold0002 (7-71)||(146351-146415)
scaffold0002 (7-71)||(136300-136364)
[»] chr4 (1 HSPs)
chr4 (67-94)||(5232080-5232107)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 9e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-27
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 10376258 - 10376322
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376258 catcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 10376322  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-27
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 10580257 - 10580193
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10580257 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaa 10580193  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 9838517 - 9838453
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||    
T  9838517 catcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaa 9838453  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 9849395 - 9849331
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||    
T  9849395 catcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaa 9849331  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 10076922 - 10076858
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  10076922 catcgcagtgaatcgtaactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaa 10076858  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 10088446 - 10088382
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  10088446 catcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaa 10088382  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 10434458 - 10434521
Alignment:
Q  9 atcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  10434458 atcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaa 10434521  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 10195329 - 10195265
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||| |||||||| |||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  10195329 catcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaagacagcatctttcaa 10195265  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 10364211 - 10364275
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||| ||||||||||| |  ||||| ||||| |||||||||| ||||||||||||    
T  10364211 catcgcagggaatcataactgatttcgtgaagcaaatcctcggcatcaaagacagcatctttcaa 10364275  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8860933 - 8860878
Alignment:
Q  17 gaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||| ||||||||||  |||||||| |||||||||||||||| ||||||||||||    
T  8860933 gaatcataactgatttggttgagcaaatcctcagcatcaaagagagcatctttcaa 8860878  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11131439 - 11131503
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||| || || ||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11131439 catcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaagatagcatctttcaa 11131503  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11149267 - 11149331
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||| || || ||||| |||| ||| ||||| ||||| |||||||||||||||||||||||    
T  11149267 catcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaa 11149331  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13160637 - 13160573
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||||||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13160637 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13160573  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13289322 - 13289258
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||||||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13289322 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13289258  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13332561 - 13332497
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||||||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13332561 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13332497  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 10126572 - 10126511
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 69  Q
    ||||| |||| || ||| ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10126572 catcgtagggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttt 10126511  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 10260342 - 10260281
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatcttt 69  Q
    ||||| |||| || ||| ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10260342 catcgtagggcattgtagctgattttattgagcaaatcctcagcatcatagattgcatcttt 10260281  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 11160430 - 11160494
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||| || || ||||| |||| ||| ||||| ||||| |||||||||| ||||||||||||    
T  11160430 catcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagacagcatctttcaa 11160494  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 11768890 - 11768826
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||| ||||| || ||||| |||| || ||| || |||||||||||||||||||| ||||||||    
T  11768890 catcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaagatagcgtctttcaa 11768826  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13170688 - 13170624
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||| ||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13170688 acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 13170624  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 13343746 - 13343682
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||||||||| |||||  ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  13343746 acatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatcatagattgcatctttca 13343682  T

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Target: chr3; HSP #22
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 10031629 - 10031586
Alignment:
Q  26 ctgatttcattgagcaagtcctcagcatcaaagatagcatcttt 69  Q
    ||||||| ||||||||| |||||||||||| |||| ||||||||    
T  10031629 ctgatttgattgagcaaatcctcagcatcatagattgcatcttt 10031586  T

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Target: scaffold0083 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 50218 - 50282
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  50218 catcgcagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaa 50282  T

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Target: chr2 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 26906553 - 26906489
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    |||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  26906553 catcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaagatagcatctttcaa 26906489  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 11484673 - 11484609
Alignment:
Q  8 catcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaa 72  Q
    ||||||| || ||| || ||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  11484673 catcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaa 11484609  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 146351 - 146415
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||||||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  146351 acatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 146415  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 136300 - 136364
Alignment:
Q  7 acatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaaagatagcatctttca 71  Q
    |||||| ||||| |||||| ||||||  || ||||| |||||||||||| |||| ||||||||||    
T  136300 acatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttca 136364  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 94
Target Start/End: Original strand, 5232080 - 5232107
Alignment:
Q  67 tttcaatgaagcagtgttgtcaatcctt 94  Q
    ||||||||||||||||||||||||||||    
T  5232080 tttcaatgaagcagtgttgtcaatcctt 5232107  T

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