View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-80 (Length: 229)
Name: Solexa-NF5668-80
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-80 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 41286671 - 41286453
Alignment:
| Q |
8 |
ttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaaaacaaactcggtctgatccatggaacagt |
107 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||| | |||||||||||| || || |||||||||||||||||||||||| ||||||| || |
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| T |
41286671 |
ttaaccaacctctgaatggaggtaactacggcgaatggagtcgatcaatgctcctcagcctcagcgccaaaaacaaactcggtctgatcgatggaacggt |
41286572 |
T |
|
| Q |
108 |
gaaagcgtggtcggctgatgacccaaaactcccattatgtaaacgttgcaatgatctggtgttaacatggatccttcattccatcgaacccgagatagct |
207 |
Q |
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||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
41286571 |
gaaagcgccgtcggctgacgacccaaaactcccattgtggaaacgttgcaatgatctggtgctaacatggatccttcattccatcgaacccgacatagct |
41286472 |
T |
|
| Q |
208 |
cgtagtgtaatattctctg |
226 |
Q |
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||||||||||| ||||||| |
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| T |
41286471 |
cgtagtgtaatcttctctg |
41286453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 19524099 - 19523985
Alignment:
| Q |
8 |
ttaaccaacctctgaatggacgtaactaagacgaatggagtcgcttaatgctcctcagtcttagtgccaaaaacaaactcggtctgatccatggaacagt |
107 |
Q |
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|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
19524099 |
ttaaccaacctctgaatggacgtaactacggctaatggagtcgcttaatgctcctcagtcttagcgccaaaaacaaactcggtctgatcgatggaacagt |
19524000 |
T |
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| Q |
108 |
gaaagcgtggtcggc |
122 |
Q |
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| T |
19523999 |
gaaagcgtcgtcggc |
19523985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 19523986 - 19523915
Alignment:
| Q |
155 |
gcaatgatctggtgttaacatggatccttcattccatcgaacccgagatagctcgtagtgtaatattctctg |
226 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19523986 |
gcaaggatctggtgttaacatggattcttcattccatcgaacccgacatagctcgtagtgtaatattctctg |
19523915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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