View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-81 (Length: 180)
Name: Solexa-NF5668-81
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-81 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 42153816 - 42153985
Alignment:
| Q |
8 |
catcaatgattcgtaacgagctaactctatttatctatctgaatgttaatactgtgtcagtgaagtgggtgaagtcataaaccggtttgtgttgtggagc |
107 |
Q |
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| T |
42153816 |
catcaatgattcgtaacgagctaactctatttatctatctgaatgttaatactgtgtcagtgaagtgggtgaagtcataaaccggtttgtgttgtggagc |
42153915 |
T |
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| Q |
108 |
cccgaatctgacccgaataattgaaatcaagactatgacgacgattgagactttttctgactgctctgtg |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42153916 |
cccgaatctgacccgaataattgaaatcaagactatgacgacgattgagactttttctgactgctctgtg |
42153985 |
T |
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