View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-88 (Length: 117)
Name: Solexa-NF5668-88
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-88 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 40432509 - 40432396
Alignment:
| Q |
4 |
aacatttactacatcaagtcactgaaaacaaactcattattgaatatagatcagccttttctcattcacatttgaaacattcaatactttcatattacca |
103 |
Q |
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| T |
40432509 |
aacatttactacatcaagtcactgaaaacaaactcattattgaatatagatcagccttttctcattcacatttgaaacattcaatactttcatattacca |
40432410 |
T |
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| Q |
104 |
tagcaaaaatcaaa |
117 |
Q |
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| T |
40432409 |
tagcaaaaatcaaa |
40432396 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 40432660 - 40432585
Alignment:
| Q |
18 |
caagtcactgaaaacaaactcattattgaatatagatcagccttttctcattcacatttgaaacattcaatacttt |
93 |
Q |
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|||||| ||||||| ||| |||| |||||||||| | ||||||||||||||| ||||||| |||||||| ||||| |
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| T |
40432660 |
caagtccctgaaaataaattcatcattgaatatacagaagccttttctcattctcatttgatacattcaacacttt |
40432585 |
T |
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