View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5668-96 (Length: 115)
Name: Solexa-NF5668-96
Description: NF5668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5668-96 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 7e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 45513664 - 45513550
Alignment:
| Q |
1 |
ccagctaagatcaaggtacacaagtctcttcaactcagcaaaccatgatggaattgaagttaaactatttttagaaaggctaaggtattcaattgaagtc |
100 |
Q |
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| T |
45513664 |
ccagctaagatcaaggtacacaagtctcttcaactcagcaaaccatgatggaattgaagttaaactatttttagaaaggctaaggtattcaattgaagtc |
45513565 |
T |
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| Q |
101 |
atgtttcgaaaaacc |
115 |
Q |
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| T |
45513564 |
atgtttcgaaaaacc |
45513550 |
T |
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