View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5670-16 (Length: 128)
Name: Solexa-NF5670-16
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-54
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 2616742 - 2616861
Alignment:
| Q |
8 |
agaagaaggtgtagcgaaggttgaggaatgtgaaaaaccgagtgctttgttctctgnggstatgcgttgataaacctgccaaccaacaatgtgattatct |
107 |
Q |
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| T |
2616742 |
agaagaaggtgtagtgaaggttgaggaatgtgaaaaaccgagtgctttgttctctg-gggtatgcgttgataaacctgccaaccaacaatgtgattatct |
2616840 |
T |
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| Q |
108 |
ttgcaggaaaggagaaaagtt |
128 |
Q |
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| T |
2616841 |
ttgcaggaaaggagaaaagtt |
2616861 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 2643727 - 2643763
Alignment:
| Q |
87 |
caaccaacaatgtgattatctttgcaggaaaggagaa |
123 |
Q |
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| T |
2643727 |
caaccaacaatgtggttatctttgcaggagaggagaa |
2643763 |
T |
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