View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5670-18 (Length: 106)
Name: Solexa-NF5670-18
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-43
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38155536 - 38155627
Alignment:
| Q |
1 |
caaatcaacaacaaatttctmtgcaaccatcttgaaagtgaagacaaactttagaaatgtaaggmagtagcatacacacttctatagtgata |
92 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38155536 |
caaatcaacaacaaatttctctgcaaccatcttgaaagtgaagacaaactttagaaatgtaaggcagtagcatacacacttctatagtgata |
38155627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University