View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5670-19 (Length: 140)

Name: Solexa-NF5670-19
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5670-19
Solexa-NF5670-19
[»] chr5 (13 HSPs)
chr5 (11-140)||(30802703-30802832)
chr5 (26-124)||(30793016-30793114)
chr5 (21-87)||(16642208-16642274)
chr5 (21-89)||(28278088-28278156)
chr5 (11-90)||(213231-213310)
chr5 (11-90)||(40147023-40147102)
chr5 (40-90)||(5057839-5057888)
chr5 (21-79)||(33906366-33906424)
chr5 (21-90)||(10055033-10055102)
chr5 (23-64)||(35615946-35615987)
chr5 (11-90)||(27015294-27015373)
chr5 (21-79)||(316538-316596)
chr5 (11-90)||(38746767-38746846)
[»] chr3 (15 HSPs)
chr3 (11-90)||(43404060-43404139)
chr3 (3-90)||(4569705-4569792)
chr3 (11-90)||(47304014-47304093)
chr3 (11-90)||(54593467-54593546)
chr3 (11-90)||(46860233-46860312)
chr3 (11-88)||(43402119-43402196)
chr3 (29-86)||(1683268-1683325)
chr3 (11-90)||(5434204-5434284)
chr3 (11-90)||(6095926-6096005)
chr3 (11-90)||(30235887-30235966)
chr3 (11-90)||(40913100-40913180)
chr3 (11-90)||(28074379-28074457)
chr3 (11-88)||(41819851-41819927)
chr3 (11-90)||(49199798-49199877)
chr3 (22-88)||(55302294-55302360)
[»] chr8 (8 HSPs)
chr8 (21-90)||(40221517-40221586)
chr8 (11-90)||(22976296-22976374)
chr8 (16-90)||(44353559-44353633)
chr8 (21-79)||(3817670-3817728)
chr8 (22-80)||(3846155-3846213)
chr8 (41-90)||(11136933-11136982)
chr8 (11-63)||(10101513-10101565)
chr8 (11-90)||(40328541-40328620)
[»] scaffold0466 (1 HSPs)
scaffold0466 (11-90)||(7090-7169)
[»] chr7 (12 HSPs)
chr7 (22-90)||(4509033-4509100)
chr7 (22-90)||(4510875-4510942)
chr7 (11-90)||(34311043-34311122)
chr7 (11-90)||(4512717-4512795)
chr7 (11-90)||(6431733-6431812)
chr7 (26-90)||(8359645-8359708)
chr7 (9-90)||(2361298-2361379)
chr7 (21-90)||(3258768-3258837)
chr7 (21-90)||(22269746-22269814)
chr7 (11-90)||(48599661-48599740)
chr7 (11-86)||(2390044-2390119)
chr7 (11-90)||(22328725-22328805)
[»] chr2 (7 HSPs)
chr2 (3-90)||(33647923-33648011)
chr2 (11-90)||(24397819-24397899)
chr2 (22-90)||(45726703-45726770)
chr2 (11-90)||(42288437-42288515)
chr2 (11-90)||(1632059-1632138)
chr2 (40-78)||(30218372-30218410)
chr2 (21-90)||(35447211-35447280)
[»] chr1 (13 HSPs)
chr1 (11-90)||(37168059-37168138)
chr1 (21-90)||(7482557-7482626)
chr1 (16-90)||(19754258-19754332)
chr1 (22-80)||(34603349-34603407)
chr1 (11-90)||(11348460-11348539)
chr1 (23-90)||(29136022-29136088)
chr1 (11-90)||(37033400-37033479)
chr1 (11-90)||(42298302-42298381)
chr1 (22-80)||(34602676-34602734)
chr1 (38-80)||(6808236-6808278)
chr1 (24-65)||(28318110-28318151)
chr1 (26-79)||(41135598-41135651)
chr1 (21-80)||(38747053-38747112)
[»] chr4 (15 HSPs)
chr4 (3-90)||(33089653-33089740)
chr4 (19-90)||(34112382-34112453)
chr4 (21-90)||(27417278-27417347)
chr4 (23-90)||(2209482-2209549)
chr4 (11-90)||(8647900-8647979)
chr4 (11-90)||(8665169-8665248)
chr4 (11-90)||(35662204-35662283)
chr4 (11-90)||(50263025-50263104)
chr4 (11-90)||(55085692-55085771)
chr4 (21-137)||(38811357-38811475)
chr4 (11-90)||(6655718-6655797)
chr4 (31-90)||(40630767-40630825)
chr4 (9-66)||(46703261-46703318)
chr4 (21-90)||(33989635-33989703)
chr4 (11-90)||(26364027-26364106)
[»] chr6 (4 HSPs)
chr6 (11-90)||(21593428-21593507)
chr6 (21-90)||(5043400-5043468)
chr6 (11-87)||(603410-603486)
chr6 (11-90)||(26800533-26800611)
[»] scaffold0286 (1 HSPs)
scaffold0286 (28-90)||(11338-11399)
[»] scaffold0014 (1 HSPs)
scaffold0014 (11-90)||(80610-80689)
[»] scaffold0176 (1 HSPs)
scaffold0176 (16-90)||(18328-18402)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 7e-44; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 30802703 - 30802832
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagtatggggaaaaaacttggggg 110  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||||  |    
T  30802703 caaaagaggaggctcttgggaaagggtttgtgccttttggggagagattcatggggttagaaaacacatgagtggagagtattgtgaaaaaacttggttg 30802802  T
Q  111 agtgaaatcatttagtcacttattcatgag 140  Q
    ||||||||||||||||| ||||||||||||    
T  30802803 agtgaaatcatttagtctcttattcatgag 30802832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 30793016 - 30793114
Alignment:
Q  26 ttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagtatggggaaaaaacttgggggagtgaaatcattta 124  Q
    |||||||| || | |||||||||||||||| |||||||||| ||| ||||||||| || |||||||| | |||| ||||  || |||||||||||||||    
T  30793016 ttgggaaaaggttggtgccttttggggagatattcatggggttgggaaacacatgagtagagagtattgtgaaacaactatggtgagtgaaatcattta 30793114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 16642274 - 16642208
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggag 87  Q
    |||||||||||||||| | |||||||||||||| |||||||||||| | | ||||||||| ||||||    
T  16642274 ggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacacatgagtggag 16642208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 28278088 - 28278156
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagag 89  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| ||||||||    
T  28278088 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagag 28278156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 213231 - 213310
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| |||||||||| || |||||||||||| ||| ||||||||| |||||||||    
T  213231 caaaagagggggctcttgggaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagt 213310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 40147023 - 40147102
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||||||  ||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  40147023 caaaagagggggctcttgggaaaatggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 40147102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 5057839 - 5057888
Alignment:
Q  40 gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  5057839 gtgccttttgggga-agattcatggggttggaaaacacatgagtggagagt 5057888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33906424 - 33906366
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacat 79  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||| ||  ||||||||    
T  33906424 ggctcttgggagagggttggtgccttttggggagagattcatggggttgagaaacacat 33906366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 10055102 - 10055033
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||||||||||  | ||||||| |||||||||||||| |||| ||| ||||||||| || ||||||    
T  10055102 ggctcttgggaaaggtttggtgccttatggggagagattcacggggttgggaaacacatgagtagagagt 10055033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 35615946 - 35615987
Alignment:
Q  23 ctcttgggaaaggggttgtgccttttggggagagattcatgg 64  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  35615946 ctcttgggaaaggggtgatgccttttggggagagattcatgg 35615987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 27015294 - 27015373
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| ||||||||||||| ||| |||||||| ||| ||||||||| |||||||||    
T  27015294 caaaagagggggctcttgtgaaaagggttggtgccttttgggga-agaatcatggggttgggaaacacatgagtggagagt 27015373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 316538 - 316596
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacat 79  Q
    ||||||||||| |||| | |||||||||||||||||||||||  || ||| ||||||||    
T  316538 ggctcttgggagagggttggtgccttttggggagagattcataaggttgggaaacacat 316596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 38746767 - 38746846
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||  |||| |||||| ||||||||||||| |||||||||||| ||| |||||| || |||||||||    
T  38746767 caaaagagggggctcttaagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacgtgagtggagagt 38746846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 5e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 43404139 - 43404060
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  43404139 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggagagt 43404060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 4569705 - 4569792
Alignment:
Q  3 tggagtatcaaaggaggaggctcttgggaaa-ggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||| |||||| |||| ||||||||||||| |||| ||||||| ||||||| |||||||||||| ||| ||||||||| |||||||||    
T  4569705 tggagaatcaaaagagggggctcttgggaaaagggggtgtgcctattgggga-agattcatggggttgggaaacacatgagtggagagt 4569792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 47304014 - 47304093
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  47304014 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 47304093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 54593467 - 54593546
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  54593467 caaaagagggggctcttgggaaaagggttggtaccttttgggga-agattcatggggatggaaaacacatgagtggagagt 54593546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 46860233 - 46860312
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| ||||| |||||||||||||| |||||||| ||| ||| ||||||||| |||||||||    
T  46860233 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatagggatgggaaacacatgagtggagagt 46860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 43402196 - 43402119
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggaga 88  Q
    |||| |||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||    
T  43402196 caaaagagggggctcttgagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggaga 43402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 1683268 - 1683325
Alignment:
Q  29 ggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtgga 86  Q
    |||||||| | |||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  1683268 ggaaagggttggtgcattttgggaagagattcatggggttggaaaacacatgagtgga 1683325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 5434284 - 5434204
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| ||||| |||  |||| ||||||||||||||||| | | ||||||||| |||||||||    
T  5434284 caaaagagggggctcttgggaaaagggttagtgttttttagggagagattcatggggttaggaaacacatgagtggagagt 5434204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 6096005 - 6095926
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||  |||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  6096005 caaaagagggggctcttttgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 6095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 30235887 - 30235966
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| ||||||||||||| | |||||||||| ||||||||||| | |||||||||    
T  30235887 caaaagagggggctcttgtgaaaagggttggtgccttttgggga-atattcatggggttggaaaacacaagagtggagagt 30235966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 40913100 - 40913180
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| |||||||| ||   |||||||||||| ||| ||||||||| |||||||||    
T  40913100 caaaagagggggctcttgggaaaagggttggtgcctttttggagaagattcatggggttgggaaacacatgagtggagagt 40913180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 28074379 - 28074457
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||||||  | | |||| ||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  28074379 caaaagagggggctcttgggaaatagttggtgcgttttgggga-agattcatggggatgggaaacacatgagtggagagt 28074457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 41819927 - 41819851
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggaga 88  Q
    |||| |||| ||||||||||||| |||||| ||||||||||| |||  ||||||||| ||| ||||||||| |||||||    
T  41819927 caaaagagggggctcttgggaaaagggttggtgccttttgggaaga--ttcatggggttgggaaacacatgagtggaga 41819851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 49199877 - 49199798
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||| ||| |||| |||||| ||||||||||||| |||||||||||| ||| ||||| ||| |||||||||    
T  49199877 caaaagagggggctattgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacatatgagtggagagt 49199798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 55302360 - 55302294
Alignment:
Q  22 gctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggaga 88  Q
    |||||||||||| |||||| ||||||||||| | | ||||||| || ||||||||||||| |||||||    
T  55302360 gctcttgggaaaagggttggtgccttttgggaaaa-attcatgaggttggaaaacacatgagtggaga 55302294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 8e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 40221517 - 40221586
Alignment:
Q  21 ggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  40221517 ggctcttgggaaaggggttagtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 40221586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 22976296 - 22976374
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||| |||||    
T  22976296 caaaagaggaggctcttggaaaaagggttggtgccttttgggga-agattcat-ggggttgaaaacacatgagtgaagagt 22976374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 44353559 - 44353633
Alignment:
Q  16 gaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||||||| |||  |||||| |||||||||| || |||||||||||| ||||||||||||| |||||||||    
T  44353559 gagggggctcttgtgaagagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagt 44353633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 3817728 - 3817670
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacat 79  Q
    ||||||||| |||||| | ||||||||||| || |||||||||||| ||||||| ||||    
T  3817728 ggctcttggaaaagggttggtgccttttggagaaagattcatggggttggaaaatacat 3817670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 3846213 - 3846155
Alignment:
Q  22 gctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatg 80  Q
    |||||||| |||| | | ||| ||||||||||||||||||||||| ||| |||||||||    
T  3846213 gctcttggaaaagagttggtgtcttttggggagagattcatggggttgggaaacacatg 3846155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 11136933 - 11136982
Alignment:
Q  41 tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||||||||||| ||||| |||  |||||||||||| |||||||||    
T  11136933 tgccttttggggagaggttcattgggtaggaaaacacatgagtggagagt 11136982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 10101565 - 10101513
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttgtgccttttggggagagattcatg 63  Q
    |||| ||||||||||||||||||||| |  ||| ||||||| |||||||||||    
T  10101565 caaaagaggaggctcttgggaaagggttgctgcattttgggaagagattcatg 10101513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 40328541 - 40328620
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| || |||||||||| |||||| |||||||| |||| |||||||||||| ||| ||||||||| ||| |||||    
T  40328541 caaaagagggggttcttgggaaaagggttggtgccttttaggga-agattcatggggatgggaaacacatgagtgtagagt 40328620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 7090 - 7169
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  7090 caaaagagggggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggagagt 7169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 4509100 - 4509033
Alignment:
Q  22 gctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  4509100 gctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 4509033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 4510942 - 4510875
Alignment:
Q  22 gctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  4510942 gctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 4510875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 34311122 - 34311043
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| || ||||||||| ||||||||||||| |||||||||    
T  34311122 caaaagagggggctcttgggaaaagggttggtgccttttgggga-aggttcatggggatggaaaacacatgagtggagagt 34311043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 4512795 - 4512717
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||||||||| | |||||||||||||| |||||||||||| | | ||||||||| |||||||||    
T  4512795 caaaagagggggctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggagagt 4512717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 6431733 - 6431812
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||| || |||||| ||||||||||||| |||||||||||| ||||||||||||| ||| |||||    
T  6431733 caaaagagggggctcttggggaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtgtagagt 6431812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 8359708 - 8359645
Alignment:
Q  26 ttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||| | |||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  8359708 ttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 8359645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 2361379 - 2361298
Alignment:
Q  9 atcaaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||| |||| |||||||| |||| |||||| |||||||||||||  ||||||||||| ||| ||||||||| |||||||||    
T  2361379 atcaaaagagggggctcttgtgaaaagggttggtgccttttggggat-gattcatggggttgggaaacacatgagtggagagt 2361298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 3258768 - 3258837
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||| ||| |||||||||    
T  3258768 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggatgggaaacatatgagtggagagt 3258837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 22269746 - 22269814
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||||||||| | | |||||||||||||| ||||||||||||  || ||||||||| |||||||||    
T  22269746 ggctcttgggaaagagttggtgccttttgggga-agattcatggggaggggaaacacatgagtggagagt 22269814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 48599740 - 48599661
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||||||| ||||| || ||||||    
T  48599740 caaaagagggggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttggaaaaaacatgagtagagagt 48599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 2390044 - 2390119
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtgga 86  Q
    |||| |||| |||| ||| |||| |||||| || |||||||||| |||||||||||| ||||||||||||| |||||    
T  2390044 caaaagagggggctattgcgaaaagggttggtggcttttgggga-agattcatggggttggaaaacacatgagtgga 2390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 22328805 - 22328725
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||| ||||| | |||| |||||||||||||||||||||| ||| ||| ||| ||||| || ||||||    
T  22328805 caaaagagggggctcttaggaaaagagttggtgccttttggggagagattcatagggttgggaaaaacatgagtagagagt 22328725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 33647923 - 33648011
Alignment:
Q  3 tggagtatcaaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||| |||||| |||||||||||||||||| ||||| |||||||||| ||||||||||| | || ||||||||| ||| || ||||||    
T  33647923 tggagaatcaaaagaggaggctcttgggaaaagggttggtgccttttgaggagagattcacgaggttggaaaacatatgagtagagagt 33648011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 24397819 - 24397899
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| ||||| ||||||||| |||||||| |||| ||| ||| ||||||||| |||||||||    
T  24397819 caaaagagggggctcttgggaaaagggttggtgccttttagggagagactcatcgggctggtaaacacatgagtggagagt 24397899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 45726703 - 45726770
Alignment:
Q  22 gctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| | | ||||||||| |||||||||    
T  45726703 gctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggagagt 45726770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 42288515 - 42288437
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||| |||  ||||||||| ||| ||||||||| |||||||||    
T  42288515 caaaagagggggctcttgggaaaagggttggtgccttttgggaaga--ttcatggggttgggaaacacatgagtggagagt 42288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 1632138 - 1632059
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| || |||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  1632138 caaaagagggggctcttgtgaaaagggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggagagt 1632059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 30218410 - 30218372
Alignment:
Q  40 gtgccttttggggagagattcatgggggtggaaaacaca 78  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  30218410 gtgccttttggggagagattcatggggttgggaaacaca 30218372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35447280 - 35447211
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||| |||| |||||| ||||||||||| | |||||||||||| ||| ||||||||| |||||||||    
T  35447280 ggctcttgtgaaaagggttggtgccttttgggaa-agattcatggggttgggaaacacatgagtggagagt 35447211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 37168059 - 37168138
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  37168059 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 37168138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7482626 - 7482557
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  7482626 ggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 7482557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 19754258 - 19754332
Alignment:
Q  16 gaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||||||| |||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  19754258 gagggggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 19754332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 34603349 - 34603407
Alignment:
Q  22 gctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatg 80  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||    
T  34603349 gctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatg 34603407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 11348460 - 11348539
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| ||  || |||||||||| || |||||||||||| ||||||||||||| |||||||||    
T  11348460 caaaagagggggctcttgggaaaaggtctggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagt 11348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 29136022 - 29136088
Alignment:
Q  23 ctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  29136022 ctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaa-acatgagtggagagt 29136088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 37033479 - 37033400
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| ||||| |||||||||| ||| ||||||||| || ||| ||||||||| |||||||||    
T  37033479 caaaagagggggctcttgggaaaagggttggtgccttttgagga-agattcatgaggttgggaaacacatgagtggagagt 37033400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 42298381 - 42298302
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| |||||||||| || |||||||||||| ||| ||||||||| |||||||||    
T  42298381 caaaagagggggctcttgtgaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagt 42298302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 34602734 - 34602676
Alignment:
Q  22 gctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatg 80  Q
    |||||||| ||| |||||| ||||||||||||| |||||||||||| |||||||||||||    
T  34602734 gctcttggtaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatg 34602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 6808236 - 6808278
Alignment:
Q  38 ttgtgccttttggggagagattcatgggggtggaaaacacatg 80  Q
    ||||| |||||||| |||||||||||||| |||||||||||||    
T  6808236 ttgtgtcttttgggaagagattcatggggttggaaaacacatg 6808278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 28318151 - 28318110
Alignment:
Q  24 tcttgggaaaggggttgtgccttttggggagagattcatggg 65  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  28318151 tcttgggaaagggttagtgcattttggggagagattcatggg 28318110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 41135598 - 41135651
Alignment:
Q  26 ttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacat 79  Q
    |||||| |||| | ||||||||| ||||||||||||||||| ||| ||||||||    
T  41135598 ttgggagagggttggtgccttttagggagagattcatggggttgggaaacacat 41135651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 38747112 - 38747053
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatg 80  Q
    ||||||||  |||||| | ||||||||||| ||||| ||||| ||| |||||||||||||    
T  38747112 ggctcttgaaaaagggttggtgccttttggagagaggttcatagggttggaaaacacatg 38747053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 33089653 - 33089740
Alignment:
Q  3 tggagtatcaaaggaggaggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||| |||||| |||| ||||||||||| |||| | ||| ||||||| |||||||||||||||  | |||||||||| |||||||||    
T  33089653 tggagaatcaaaagagggggctcttgggagagggttggtgtcttttggagagagattcatggggtcgaaaaacacatgagtggagagt 33089740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 34112382 - 34112453
Alignment:
Q  19 gaggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||| | |||||| | ||||||||||||||||| |||| |||| ||||||||||||| |||||||||    
T  34112382 gaggctcttagaaaagggttggtgccttttggggagaggttcacggggttggaaaacacatgagtggagagt 34112453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 27417347 - 27417278
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||||||||||||||||| || |||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  27417347 ggctcttgggaaaggggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggagagt 27417278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 2209482 - 2209549
Alignment:
Q  23 ctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  2209482 ctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 2209549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 8647900 - 8647979
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||| | |||||||||    
T  8647900 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacaggagtggagagt 8647979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 8665169 - 8665248
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||| ||||||| | |||||||||    
T  8665169 caaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacaggagtggagagt 8665248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 35662204 - 35662283
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||| ||||| |||||| ||||||||||||| |||||||||||| |||||||||||||  ||||||||    
T  35662204 caaaagagggggctcttaggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgaatggagagt 35662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 50263104 - 50263025
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  50263104 caaaagagggggctcttggaaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 50263025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 55085771 - 55085692
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||| || |||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  55085771 caaaagagggggctcttggggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 55085692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 38811475 - 38811357
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt--atggggaaaaaacttgggggagtgaaat 118  Q
    |||||||||||||||| | ||| |||||| ||||||||||||| || | | ||||||||  |||||||||  || || ||| | |||||| |||||||||    
T  38811475 ggctcttgggaaagggttggtgtcttttgcggagagattcatgaggttaggaaacacataagtggagagtcaattggtaaacaccttgggtgagtgaaat 38811376  T
Q  119 catttagtcacttattcat 137  Q
    |||| |||| ||| |||||    
T  38811375 cattgagtctcttgttcat 38811357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 6655718 - 6655797
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||| || |||||| |||||||||| || |||||||||||| ||| ||||||||| |||||||||    
T  6655718 caaaagagggggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagt 6655797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 40630767 - 40630825
Alignment:
Q  31 aaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||||| | |||||||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  40630767 aaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagt 40630825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 46703261 - 46703318
Alignment:
Q  9 atcaaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggg 66  Q
    |||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  46703261 atcaaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatgggg 46703318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 33989635 - 33989703
Alignment:
Q  21 ggctcttgggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||| | || | |||||||||||| |||||||||||||  ||| ||||||||| |||||||||    
T  33989635 ggctcttgggagaaggttggtgccttttggg-agagattcatgggattgggaaacacatgagtggagagt 33989703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 26364027 - 26364106
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttgtg-ccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||| |||| |||||| | |||||||| || |||||||||||| ||| ||||||||| |||||||||    
T  26364027 caaaagagggggctcttgtgaaaagggttggggccttttggaga-agattcatggggttgggaaacacatgagtggagagt 26364106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 21593428 - 21593507
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||| || |||||| |||||||||| || |||||||||||| ||||||||||||| |||||||||    
T  21593428 caaaagagggggctcttggggaaagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagt 21593507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 5043400 - 5043468
Alignment:
Q  21 ggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||||||| |||||| ||||||||||| |||  ||||||||| ||| ||||||||| |||||||||    
T  5043400 ggctcttgggaaaagggttggtgccttttgggaaga--ttcatggggttgggaaacacatgagtggagagt 5043468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 603486 - 603410
Alignment:
Q  11 caaaggaggaggctcttg-ggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggag 87  Q
    |||| |||| |||||||| |||||||| | ||||||||||| || |||||||||||| ||| ||||||||| ||||||    
T  603486 caaaagagggggctcttgaggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggag 603410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 26800533 - 26800611
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggtt-gtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||||||||  |||| |||||||||||||| |||||||| ||| ||| ||||||||| |||||||||    
T  26800533 caaaagagggggctcttgggaaaaaggttggtgccttttgggga-agattcat-gggatgggaaacacatgagtggagagt 26800611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 11338 - 11399
Alignment:
Q  28 gggaaaggggttgtgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    ||||||||| | ||||||||||| || |||||||||||| ||| ||||||||| |||||||||    
T  11338 gggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagt 11399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 80689 - 80610
Alignment:
Q  11 caaaggaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||| |||||||  |||| |||||| ||||||||||||| |||||||||||| ||| ||||||||| | |||||||    
T  80689 caaaagagggggctcttatgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagcggagagt 80610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 18402 - 18328
Alignment:
Q  16 gaggaggctcttgggaaaggggttg-tgccttttggggagagattcatgggggtggaaaacacatgcgtggagagt 90  Q
    |||| |||||||| |||| |||||| ||||||||||||  ||||||||| || || |||||||||| |||||||||    
T  18402 gagggggctcttgtgaaaagggttggtgccttttgggggaagattcatgaggttg-aaaacacatgagtggagagt 18328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University