View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5670-22 (Length: 103)
Name: Solexa-NF5670-22
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-22 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0103 (Bit Score: 91; Significance: 1e-44; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6314 - 6212
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6314 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
6215 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
6214 |
tct |
6212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12808889 - 12808787
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808889 |
agaaccaaaggtcattgtcactcaaatttcgcacgcaaccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
12808790 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
12808789 |
tct |
12808787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37433118 - 37433220
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| ||||||| ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
37433118 |
agaaccaaaggttattgtcattcaaatttcacacgtagacatatttatgattcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
37433217 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
37433218 |
tct |
37433220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2633695 - 2633797
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2633695 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
2633794 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
2633795 |
tct |
2633797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12082830 - 12082932
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| ||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
12082830 |
agaaccaaaggttattatcattcaaatttcacacgtagccatatttatgagtcctgcacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
12082929 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
12082930 |
tct |
12082932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21838416 - 21838314
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
21838416 |
agaaccaaaggttattgtcattcaaatttaacacgtagccatatttatgagtcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
21838317 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
21838316 |
tct |
21838314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32447217 - 32447319
Alignment:
| Q |
1 |
agaagcaaaggccattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
100 |
Q |
| |
|
|||| |||||| ||||||| |||||||| || | |||| ||| | ||||||||||| || ||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
32447217 |
agaaccaaaggttattgtcaatcaaatttaacatgtagccgtatctttgagtcctacaactaatgaaatcagttcaatatttcaaagaagttagcaaaaa |
32447316 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
32447317 |
tct |
32447319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 27261078 - 27261133
Alignment:
| Q |
48 |
tgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatct |
103 |
Q |
| |
|
||||||||||| || ||| ||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
27261078 |
tgagtcctacaactaatgaaataagttcaatattccaaagaagttggcaaaaatct |
27261133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University