View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5670-3 (Length: 282)
Name: Solexa-NF5670-3
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-3 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-112
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 47493817 - 47494067
Alignment:
| Q |
8 |
ttttgatcatctgttccagttcttcgtctgtcaccttttctccgatggtactcaatactgacctcaactgggctcacacgtaatatcaattatatagttc |
107 |
Q |
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| T |
47493817 |
ttttgatcatctgctccagttcttcgtctgtcaccttttctccgatggtactcaatactgacctcaactgggctcacacgtaatatcaattatatagttc |
47493916 |
T |
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| Q |
108 |
aatattacggtacgacaaaacaaattatatatgttgaattaattatacctcactgggtgatatgtaaccatcttnntmtcnnwgtcgamcaccctgaaag |
207 |
Q |
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| T |
47493917 |
---attacggtacaacaaaacaaattatatatgttgaattaattatacctcactgggtgatatgtaaccatctt--tatctttgtcgaacaccctgaaag |
47494011 |
T |
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| Q |
208 |
cttccttaaattcctcttctgcttcactttcctttttcgtacataaaaattcacaa |
263 |
Q |
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| T |
47494012 |
cttccttaaattcctcttccgcttcactttcctttttcgtacatacaaattcacaa |
47494067 |
T |
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