View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5670-5 (Length: 254)
Name: Solexa-NF5670-5
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-5 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 47494067 - 47493932
Alignment:
| Q |
66 |
ttgtgaatttttatgtacgaaaaaggaaagtgaagcataagaggaatttaaggaagctttcagggtgttcgacaaagataaagatggttacatatcaccc |
165 |
Q |
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| T |
47494067 |
ttgtgaatttgtatgtacgaaaaaggaaagtgaagcggaagaggaatttaaggaagctttcagggtgttcgacaaagataaagatggttacatatcaccc |
47493968 |
T |
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| Q |
166 |
agtgaggtataattaattcaatatatataatttgtt |
201 |
Q |
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| T |
47493967 |
agtgaggtataattaattcaacatatataatttgtt |
47493932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 47493945 - 47493992
Alignment:
| Q |
198 |
tgttgaattaattatacctcactgggtgatatgtaaccatcttcatct |
245 |
Q |
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| T |
47493945 |
tgttgaattaattatacctcactgggtgatatgtaaccatctttatct |
47493992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 55071261 - 55071212
Alignment:
| Q |
21 |
gatcaagcaagaatttttcgattgatatatc--gtatcatagagtgtttg |
68 |
Q |
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| T |
55071261 |
gatcaagcaagtatttttcgattgatatatcgtgtattatagagtgtttg |
55071212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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