View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5670-6 (Length: 469)
Name: Solexa-NF5670-6
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-6 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 82 - 440
Target Start/End: Original strand, 46121933 - 46122273
Alignment:
| Q |
82 |
agagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaraatttaaatttaagattccacaaaatccaatttgttaaa |
181 |
Q |
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| T |
46121933 |
agagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttgttaaa |
46122032 |
T |
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| Q |
182 |
caatccctcgaaattagatatannnnnnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnntatcataaaaaataagct |
281 |
Q |
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| T |
46122033 |
caatccctcgaaattagatatattttttttatcaacacaactttttttaaaatacaaatagtcttaattgaat-------------acaaaaaataagct |
46122119 |
T |
|
| Q |
282 |
ttttaaatcctgtaaatcaccaaataccatcctccgtttttaaaatttgtacctatgctactycmckttaaacccatccatcccacagagtgtgtctact |
381 |
Q |
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| T |
46122120 |
ttttaaatcctgtaaatcaccaaattccatcccccgtttttaaaatttgtacctatgc-atttcccgtcaaacccatccatcccacaga----gtctact |
46122214 |
T |
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| Q |
382 |
taaaacgtcatctatctactgtcatgccgagaatcaatatttcctttttgacttattct |
440 |
Q |
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| T |
46122215 |
taaaacgtcatctatctactctcatgccgagaatcaatatttcctttttgactcattct |
46122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 46121862 - 46121913
Alignment:
| Q |
7 |
agtttaacattctcattcataatattcttcttcatacacactcttttatgtg |
58 |
Q |
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| T |
46121862 |
agtttaacattctcattcataatattcttcttcatacacactcttttatgtg |
46121913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
| Q |
163 |
caaaatccaatttgttaaacaatccctcgaaatt |
196 |
Q |
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| T |
1152179 |
caaaatccaatttattaaacaatccctcgaaatt |
1152212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 30385130 - 30385166
Alignment:
| Q |
160 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
196 |
Q |
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| T |
30385130 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
30385166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31067625 - 31067589
Alignment:
| Q |
160 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
196 |
Q |
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| T |
31067625 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
31067589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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