View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5670-9 (Length: 164)
Name: Solexa-NF5670-9
Description: NF5670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5670-9 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 43716115 - 43716266
Alignment:
| Q |
1 |
cagagacaacaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatga |
100 |
Q |
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| T |
43716115 |
cagagacaacaagaagaagaagctagaaaaaataataacaaattaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatga |
43716214 |
T |
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| Q |
101 |
taattattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttg |
157 |
Q |
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| T |
43716215 |
taataattcaaag-----atcacatacagaggaaatcatattccacaaactctgttg |
43716266 |
T |
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Target: chr1 (Bit Score: 70; Significance: 7e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 52891495 - 52891349
Alignment:
| Q |
9 |
acaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcc------tgcaggtggtggctcaattaatgata |
102 |
Q |
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| T |
52891495 |
acaacaagaagaagctagaaaaaataataa---gttaacaatcatttacaatcaccagatcccattccagtcctagcaggtggtggccaaattaatgata |
52891399 |
T |
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| Q |
103 |
attattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttg |
157 |
Q |
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| T |
52891398 |
ataattcaaag-----atcacttacagaggaaatcatattccacaaactctgttg |
52891349 |
T |
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