View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-19 (Length: 253)
Name: Solexa-NF5676-19
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 45787786 - 45787541
Alignment:
| Q |
7 |
atatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttctactgaatacgatggat |
105 |
Q |
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| T |
45787786 |
atatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttctactgaatacgatggat |
45787687 |
T |
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| Q |
106 |
ccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcctctgtgctgctcctcatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
45787686 |
ccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcctctgtgctgccttttatc |
45787587 |
T |
|
| Q |
206 |
tcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787586 |
tcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaa |
45787541 |
T |
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