View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5676-2 (Length: 219)

Name: Solexa-NF5676-2
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5676-2
Solexa-NF5676-2
[»] chr4 (2 HSPs)
chr4 (59-219)||(56318888-56319051)
chr4 (9-48)||(56318891-56318930)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 56318888 - 56319051
Alignment:
Q  59 catagggtggaaaaagtaatagtctattattcgtgacatttaatcccagcaaaatttgaatttagtc--tctctttttgttgtagatagataaaatgaca 156  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | | |||||||||||||||||||||||||||    
T  56318888 catagggtgggaaaagtaatagtctattattcgtgacatttaatcccaacaaaatttgaatttagtctttttttttttgttgtagatagataaaatgaca 56318987  T
Q  157 ataatcattagaaattcactggaattagaa-ctcgatgatcacatcgtctcatttgtggactat 219  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  56318988 ataatcattagaaattcacaggaattagaacctcgatgatcacatcgtctgatttgtggactat 56319051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 56318891 - 56318930
Alignment:
Q  9 agggtggaaaaagtaatagtctattattcgtgacatttaa 48  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  56318891 agggtgggaaaagtaatagtctattattcgtgacatttaa 56318930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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