View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-20 (Length: 171)
Name: Solexa-NF5676-20
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-20 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 3922372 - 3922211
Alignment:
| Q |
8 |
aaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaa |
107 |
Q |
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| T |
3922372 |
aaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaa |
3922273 |
T |
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| Q |
108 |
gctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
169 |
Q |
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| T |
3922272 |
gctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
3922211 |
T |
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Target: chr6 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 34958278 - 34958404
Alignment:
| Q |
12 |
tggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagcta |
111 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| || |||||||||||||||||| |
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| T |
34958278 |
tggaggtgaagatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaattagctaccattttagaaaagcta |
34958377 |
T |
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| Q |
112 |
caatctctgatcagttggagggatcca |
138 |
Q |
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| T |
34958378 |
caatttctgatcagttggagggatcca |
34958404 |
T |
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