View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-27 (Length: 162)
Name: Solexa-NF5676-27
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-27 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 9e-79; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 9e-79
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 2507366 - 2507517
Alignment:
| Q |
11 |
cataggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
110 |
Q |
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| T |
2507366 |
cataggcacgtggattgatagaagcttttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt |
2507465 |
T |
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| Q |
111 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtct |
162 |
Q |
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| T |
2507466 |
ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtct |
2507517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-75
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 2514458 - 2514607
Alignment:
| Q |
13 |
taggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
112 |
Q |
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| T |
2514458 |
taggcacgtggattgatagaagcttttgggtcactcataagagtcctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg |
2514557 |
T |
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| Q |
113 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtct |
162 |
Q |
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| T |
2514558 |
aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtct |
2514607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-22
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 2434555 - 2434451
Alignment:
| Q |
58 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
157 |
Q |
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| T |
2434555 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
2434456 |
T |
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| Q |
158 |
ggtct |
162 |
Q |
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||||| |
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| T |
2434455 |
ggtct |
2434451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 2430975 - 2430881
Alignment:
| Q |
58 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaat |
152 |
Q |
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| T |
2430975 |
ctcatgtaaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaat |
2430881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 2519204 - 2519305
Alignment:
| Q |
47 |
tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc |
146 |
Q |
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| T |
2519204 |
tcataagattcctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtc |
2519303 |
T |
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| Q |
147 |
aa |
148 |
Q |
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|| |
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| T |
2519304 |
aa |
2519305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 1458014 - 1457921
Alignment:
| Q |
58 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaa |
151 |
Q |
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| T |
1458014 |
ctcaggtaaggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaa |
1457921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 2427721 - 2427628
Alignment:
| Q |
58 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaa |
151 |
Q |
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| T |
2427721 |
ctcaggtaaggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaa |
2427628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 11846044 - 11846008
Alignment:
| Q |
53 |
gagtcctcatgtaaggatcacaagacaagtaaagatt |
89 |
Q |
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| T |
11846044 |
gagtcctcgtgtaaggttcacaagacaagtaaagatt |
11846008 |
T |
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