View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5676-3 (Length: 142)

Name: Solexa-NF5676-3
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5676-3
Solexa-NF5676-3
[»] chr6 (25 HSPs)
chr6 (9-138)||(28155514-28155643)
chr6 (15-138)||(22010647-22010771)
chr6 (15-136)||(14737527-14737648)
chr6 (15-138)||(11856985-11857109)
chr6 (15-138)||(28184516-28184639)
chr6 (16-138)||(6005428-6005552)
chr6 (15-138)||(14742387-14742510)
chr6 (9-138)||(16838755-16838886)
chr6 (9-138)||(33330388-33330519)
chr6 (16-137)||(6438513-6438634)
chr6 (9-138)||(33335885-33336016)
chr6 (53-138)||(5674770-5674856)
chr6 (37-127)||(5757462-5757553)
chr6 (24-127)||(5572212-5572316)
chr6 (64-127)||(10077176-10077240)
chr6 (66-117)||(22709050-22709102)
chr6 (53-127)||(21356058-21356133)
chr6 (53-136)||(21801343-21801429)
chr6 (53-127)||(18232867-18232943)
chr6 (53-138)||(31086472-31086560)
chr6 (53-109)||(22963739-22963797)
chr6 (53-109)||(23824596-23824654)
chr6 (64-135)||(4629967-4630040)
chr6 (53-116)||(31979546-31979611)
chr6 (103-138)||(5343492-5343527)
[»] chr4 (29 HSPs)
chr4 (9-138)||(5732676-5732805)
chr4 (9-138)||(3814035-3814164)
chr4 (15-138)||(45357247-45357370)
chr4 (15-138)||(51520468-51520592)
chr4 (16-138)||(9224358-9224481)
chr4 (16-138)||(9229145-9229268)
chr4 (18-136)||(56146664-56146783)
chr4 (15-138)||(45347767-45347891)
chr4 (16-138)||(18855738-18855860)
chr4 (15-138)||(24741951-24742076)
chr4 (53-138)||(29760652-29760738)
chr4 (66-138)||(28468542-28468615)
chr4 (53-127)||(36315229-36315304)
chr4 (53-127)||(36329438-36329513)
chr4 (24-127)||(10047401-10047505)
chr4 (24-127)||(5396643-5396746)
chr4 (53-127)||(39246016-39246092)
chr4 (53-118)||(16623292-16623359)
chr4 (53-127)||(31985634-31985708)
chr4 (37-127)||(3796502-3796594)
chr4 (64-127)||(5143281-5143345)
chr4 (66-127)||(5269204-5269266)
chr4 (24-116)||(16630651-16630744)
chr4 (63-116)||(38152449-38152503)
chr4 (24-127)||(5147699-5147803)
chr4 (63-127)||(24333831-24333896)
chr4 (24-118)||(3777580-3777674)
chr4 (63-127)||(6743425-6743490)
chr4 (53-127)||(39774304-39774380)
[»] scaffold0355 (2 HSPs)
scaffold0355 (9-138)||(9587-9716)
scaffold0355 (9-62)||(3792-3845)
[»] chr5 (36 HSPs)
chr5 (9-138)||(28807518-28807646)
chr5 (15-138)||(1457112-1457236)
chr5 (15-138)||(15044697-15044820)
chr5 (15-138)||(43592290-43592414)
chr5 (16-138)||(37556573-37556696)
chr5 (16-138)||(37561395-37561518)
chr5 (15-136)||(43598737-43598859)
chr5 (15-136)||(43604229-43604351)
chr5 (15-136)||(43609721-43609843)
chr5 (15-138)||(27449825-27449949)
chr5 (15-138)||(27444981-27445105)
chr5 (15-135)||(30631420-30631542)
chr5 (16-138)||(2785386-2785510)
chr5 (16-138)||(33768190-33768314)
chr5 (16-138)||(33791327-33791451)
chr5 (15-138)||(31180225-31180349)
chr5 (9-138)||(31396934-31397067)
chr5 (31-138)||(31401815-31401924)
chr5 (53-138)||(38192184-38192270)
chr5 (53-138)||(38219409-38219495)
chr5 (53-138)||(35387673-35387759)
chr5 (53-138)||(24135859-24135945)
chr5 (24-127)||(10281773-10281877)
chr5 (24-127)||(9353304-9353407)
chr5 (53-127)||(36932350-36932425)
chr5 (53-117)||(15464564-15464629)
chr5 (24-127)||(3880321-3880425)
chr5 (24-127)||(11916943-11917047)
chr5 (24-127)||(14520252-14520355)
chr5 (53-118)||(12084175-12084241)
chr5 (53-127)||(28832281-28832356)
chr5 (53-117)||(19588778-19588844)
chr5 (63-127)||(17003970-17004035)
chr5 (85-127)||(4410241-4410283)
chr5 (53-118)||(42127410-42127476)
chr5 (91-118)||(27910675-27910702)
[»] chr3 (46 HSPs)
chr3 (9-138)||(18656446-18656575)
chr3 (15-138)||(22173145-22173269)
chr3 (9-138)||(2672874-2673005)
chr3 (9-138)||(2677030-2677161)
chr3 (15-138)||(28503825-28503950)
chr3 (16-138)||(8512228-8512352)
chr3 (16-138)||(8517108-8517232)
chr3 (9-138)||(24968118-24968249)
chr3 (15-138)||(7167255-7167380)
chr3 (16-138)||(32475496-32475618)
chr3 (16-138)||(32480354-32480476)
chr3 (15-138)||(8739024-8739149)
chr3 (15-138)||(9091262-9091387)
chr3 (15-138)||(40372757-40372881)
chr3 (53-138)||(2671586-2671672)
chr3 (53-138)||(8477373-8477459)
chr3 (15-105)||(28501658-28501750)
chr3 (53-138)||(26928591-26928677)
chr3 (53-138)||(1305959-1306045)
chr3 (37-127)||(16264372-16264463)
chr3 (53-127)||(32143343-32143418)
chr3 (24-127)||(8370448-8370551)
chr3 (53-127)||(27452980-27453055)
chr3 (53-127)||(27974942-27975017)
chr3 (24-127)||(18552844-18552948)
chr3 (24-127)||(36029115-36029219)
chr3 (53-127)||(1736294-1736370)
chr3 (53-127)||(48438236-48438312)
chr3 (53-127)||(6794703-6794778)
chr3 (53-127)||(21711245-21711320)
chr3 (66-127)||(27986449-27986511)
chr3 (66-127)||(33386669-33386731)
chr3 (23-127)||(40592742-40592847)
chr3 (53-127)||(30709779-30709855)
chr3 (100-138)||(10207945-10207983)
chr3 (24-127)||(3715963-3716067)
chr3 (53-116)||(26299021-26299086)
chr3 (53-127)||(25795803-25795879)
chr3 (24-127)||(40844674-40844777)
chr3 (82-118)||(4386947-4386983)
chr3 (53-127)||(37466313-37466388)
chr3 (66-127)||(1417493-1417555)
chr3 (66-127)||(39039995-39040057)
chr3 (81-118)||(53894082-53894119)
chr3 (53-127)||(47923895-47923971)
chr3 (53-127)||(3323680-3323755)
[»] chr8 (30 HSPs)
chr8 (15-138)||(25328229-25328352)
chr8 (18-138)||(7289879-7290000)
chr8 (16-138)||(35745402-35745526)
chr8 (16-138)||(39784774-39784896)
chr8 (15-138)||(6311308-6311432)
chr8 (16-138)||(10684214-10684338)
chr8 (15-138)||(33037768-33037892)
chr8 (15-138)||(36979388-36979513)
chr8 (15-138)||(30655657-30655782)
chr8 (15-138)||(18853128-18853254)
chr8 (15-138)||(4760036-4760161)
chr8 (15-138)||(10689104-10689229)
chr8 (15-138)||(18870522-18870648)
chr8 (53-138)||(1261954-1262040)
chr8 (66-138)||(26287912-26287985)
chr8 (66-138)||(26301169-26301242)
chr8 (66-138)||(26313163-26313236)
chr8 (24-127)||(4456050-4456153)
chr8 (53-127)||(31071229-31071304)
chr8 (63-127)||(26403240-26403305)
chr8 (24-127)||(7412363-7412466)
chr8 (53-127)||(19175754-19175829)
chr8 (24-127)||(23799548-23799652)
chr8 (53-127)||(6127243-6127319)
chr8 (66-127)||(4696609-4696671)
chr8 (85-127)||(9765852-9765894)
chr8 (53-127)||(5702482-5702558)
chr8 (53-127)||(19752394-19752469)
chr8 (38-109)||(6813723-6813796)
chr8 (85-118)||(18810982-18811015)
[»] chr2 (35 HSPs)
chr2 (15-133)||(32246804-32246922)
chr2 (15-136)||(39811939-39812060)
chr2 (15-138)||(44312574-44312698)
chr2 (16-138)||(19344432-19344556)
chr2 (16-138)||(19349290-19349414)
chr2 (15-138)||(11098888-11099013)
chr2 (15-138)||(14291499-14291624)
chr2 (15-138)||(9296362-9296487)
chr2 (53-138)||(3491761-3491847)
chr2 (53-138)||(25398506-25398592)
chr2 (53-135)||(25403647-25403730)
chr2 (24-138)||(8040070-8040188)
chr2 (53-118)||(25407653-25407719)
chr2 (24-127)||(13569350-13569454)
chr2 (24-127)||(28259149-28259252)
chr2 (24-127)||(10445415-10445519)
chr2 (66-138)||(40738854-40738926)
chr2 (53-138)||(21629954-21630041)
chr2 (53-127)||(34388880-34388956)
chr2 (37-118)||(8390133-8390216)
chr2 (24-116)||(34682305-34682398)
chr2 (24-127)||(10707223-10707327)
chr2 (24-138)||(17865213-17865329)
chr2 (53-127)||(20522242-20522318)
chr2 (24-127)||(14698979-14699082)
chr2 (24-127)||(23078442-23078545)
chr2 (63-118)||(31056075-31056131)
chr2 (53-127)||(42039669-42039744)
chr2 (18-127)||(36757728-36757837)
chr2 (24-127)||(33118158-33118262)
chr2 (24-127)||(39482953-39483057)
chr2 (63-116)||(16940219-16940273)
chr2 (63-116)||(17010884-17010938)
chr2 (53-127)||(33528620-33528696)
chr2 (65-111)||(27149306-27149353)
[»] chr7 (34 HSPs)
chr7 (15-138)||(24024277-24024400)
chr7 (16-138)||(19992324-19992447)
chr7 (15-138)||(31109534-31109657)
chr7 (15-138)||(12406342-12406466)
chr7 (15-138)||(12396922-12397046)
chr7 (16-138)||(24261273-24261397)
chr7 (16-138)||(24266152-24266276)
chr7 (16-138)||(16880084-16880207)
chr7 (16-138)||(16884940-16885063)
chr7 (9-138)||(21812182-21812312)
chr7 (15-138)||(20357508-20357633)
chr7 (15-138)||(2057976-2058101)
chr7 (59-138)||(4866741-4866820)
chr7 (53-138)||(1533444-1533530)
chr7 (53-138)||(18408774-18408860)
chr7 (53-138)||(21639819-21639905)
chr7 (53-138)||(18413651-18413736)
chr7 (53-138)||(21646017-21646103)
chr7 (24-127)||(29159825-29159929)
chr7 (24-127)||(21983306-21983411)
chr7 (53-118)||(44848684-44848750)
chr7 (24-127)||(2647667-2647771)
chr7 (24-127)||(46516281-46516385)
chr7 (24-127)||(2580412-2580515)
chr7 (53-127)||(49091683-49091759)
chr7 (53-118)||(33332449-33332516)
chr7 (24-127)||(55970-56073)
chr7 (53-127)||(9190008-9190083)
chr7 (53-127)||(20284111-20284186)
chr7 (65-118)||(35960847-35960901)
chr7 (24-118)||(4796638-4796733)
chr7 (24-118)||(2479368-2479461)
chr7 (85-127)||(28617258-28617300)
chr7 (66-118)||(9185178-9185231)
[»] chr1 (29 HSPs)
chr1 (16-138)||(25445040-25445163)
chr1 (15-138)||(41390592-41390715)
chr1 (15-138)||(41398247-41398370)
chr1 (16-138)||(39445511-39445633)
chr1 (16-138)||(44023825-44023947)
chr1 (16-138)||(1054963-1055085)
chr1 (9-138)||(43988405-43988538)
chr1 (15-138)||(24787325-24787450)
chr1 (53-138)||(24202769-24202855)
chr1 (53-138)||(19358843-19358929)
chr1 (53-138)||(19361432-19361518)
chr1 (53-138)||(19380072-19380158)
chr1 (24-127)||(26644869-26644972)
chr1 (24-127)||(47703907-47704011)
chr1 (24-127)||(3281730-3281833)
chr1 (24-118)||(21536541-21536635)
chr1 (53-118)||(27104371-27104438)
chr1 (53-127)||(16124515-16124591)
chr1 (53-127)||(19072950-19073026)
chr1 (53-127)||(19120840-19120916)
chr1 (24-127)||(9476283-9476387)
chr1 (63-127)||(29651833-29651898)
chr1 (53-118)||(13604623-13604689)
chr1 (63-127)||(775694-775759)
chr1 (63-127)||(13598420-13598485)
chr1 (56-127)||(37069792-37069864)
chr1 (53-127)||(32889461-32889536)
chr1 (53-115)||(47098824-47098887)
chr1 (16-44)||(25439847-25439875)
[»] scaffold0135 (1 HSPs)
scaffold0135 (16-138)||(35013-35136)
[»] scaffold0464 (1 HSPs)
scaffold0464 (16-138)||(374-496)
[»] scaffold0197 (2 HSPs)
scaffold0197 (16-138)||(14259-14383)
scaffold0197 (9-138)||(19108-19239)
[»] scaffold0259 (1 HSPs)
scaffold0259 (9-138)||(2194-2325)
[»] scaffold0028 (1 HSPs)
scaffold0028 (9-138)||(148899-149030)
[»] scaffold0188 (2 HSPs)
scaffold0188 (53-138)||(17952-18038)
scaffold0188 (53-138)||(24045-24131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (80-138)||(181980-182038)
[»] scaffold0140 (1 HSPs)
scaffold0140 (53-127)||(8419-8494)
[»] scaffold0087 (2 HSPs)
scaffold0087 (37-113)||(43945-44022)
scaffold0087 (24-127)||(36804-36907)
[»] scaffold0036 (1 HSPs)
scaffold0036 (53-138)||(85693-85780)
[»] scaffold0148 (1 HSPs)
scaffold0148 (24-127)||(10751-10855)
[»] scaffold0006 (3 HSPs)
scaffold0006 (53-118)||(133280-133346)
scaffold0006 (63-127)||(2514-2579)
scaffold0006 (63-127)||(5705-5770)
[»] scaffold0098 (1 HSPs)
scaffold0098 (66-118)||(45284-45337)
[»] scaffold0154 (1 HSPs)
scaffold0154 (85-118)||(11500-11533)
[»] scaffold0176 (1 HSPs)
scaffold0176 (24-118)||(17294-17389)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 6e-63; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 28155514 - 28155643
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28155514 gggtagatctagggtttgttcatgtgtaaagcttgaaagctaaattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 28155613  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||    
T  28155614 ccagattaggccacattggctgaactgggt 28155643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 22010647 - 22010771
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010647 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 22010746  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  22010747 ttaggccatattggctgaactgggt 22010771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 14737527 - 14737648
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737527 atctagggtttgttcatatgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 14737626  T
Q  115 taggccacattggctgaactgg 136  Q
    ||||||| ||||||||||||||    
T  14737627 taggccatattggctgaactgg 14737648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 11857109 - 11856985
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11857109 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccata 11857010  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  11857009 ttaggccatattggctgaactgggt 11856985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 28184639 - 28184516
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28184639 atctagggtttgttcatgtgtaaagcttgaaggctagagtgttgtaaccttttgtaacactttctcatattagattggagagctgctctctcccccagat 28184540  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  28184539 taggccatattggctgaactgggt 28184516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 6005552 - 6005428
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  6005552 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 6005453  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  6005452 ttaggccacattggctgaactgggt 6005428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 14742387 - 14742510
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14742387 atctagggtttgttcatatgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaaat 14742486  T
Q  115 taggccacattggctgaactgggt 138  Q
    |||| || ||||||||||||||||    
T  14742487 taggtcatattggctgaactgggt 14742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 16838886 - 16838755
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaa-agctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  16838886 gggtagatctagggtttgttcatgtgtaaagcttgaatagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctc 16838787  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    |||||||||| |||||||||||||||||||||    
T  16838786 ccccagattaagccacattggctgaactgggt 16838755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 33330388 - 33330519
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  33330388 gggtagatctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctc 33330487  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  33330488 ccccagattaggccacattggctgaactgggt 33330519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 6438634 - 6438513
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  6438634 tctagggtttgttcatgtgtaaagcttgacaagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 6438536  T
Q  115 taggccacattggctgaactggg 137  Q
    ||||||| |||||||||||||||    
T  6438535 taggccatattggctgaactggg 6438513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 33335885 - 33336016
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  33335885 gggtagatctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctc 33335984  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    |||||||||||| |||||||||||||||||||    
T  33335985 ccccagattaggtcacattggctgaactgggt 33336016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 5674770 - 5674856
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5674770 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggt 5674856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 5757462 - 5757553
Alignment:
Q  37 aagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||| ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  5757462 aagcttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 5757553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 5572212 - 5572316
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||| ||    
T  5572212 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtca 5572310  T
Q  122 cattgg 127  Q
     |||||    
T  5572311 tattgg 5572316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 10077176 - 10077240
Alignment:
Q  64 ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  10077176 ttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 10077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 22709102 - 22709050
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattag 117  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22709102 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattag 22709050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 21356133 - 21356058
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || |||||    
T  21356133 ttcttgtaactcttagtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattgg 21356058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 21801343 - 21801429
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg-ctgaactgg 136  Q
    |||||||||| |||||||||||||||  || || |||||||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  21801343 ttcttgtaactcttttgtaacacttttatcttagtggattggagagctgctcgctcccccagattaggtcatattggactgaactgg 21801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 18232943 - 18232867
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| || ||||||| | ||||||||||||||||||||| || |||||    
T  18232943 ttcttgtaactcttttgtaacactttcatcatagtgaattggagggttgctctctcccccagattaggtcatattgg 18232867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 31086472 - 31086560
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg-ctgaactgggt 138  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||| |||||||||||| |||||||  || ||||| |||||||||||    
T  31086472 ttcttgtaactcctttgtaacactttcatcatagtggattggagagttgctctctcccctagattagatcatattggactgaactgggt 31086560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 22963797 - 22963739
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccc 109  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  22963797 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccc 22963739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 23824596 - 23824654
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccc 109  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  23824596 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccc 23824654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 4630040 - 4629967
Alignment:
Q  64 ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg-ctgaactg 135  Q
    ||||||||||||||| || || ||||||||||||||||||||| ||| |||||||| || ||||| ||||||||    
T  4630040 ttttgtaacactttcatcttagtggattggagagctgctctcttccctagattaggtcatattggactgaactg 4629967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 31979611 - 31979546
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||| |||||| ||||||||| || || |||||||||| |||||||||||||||||||||    
T  31979611 ttcttgtaactcttttgcaacactttcatcttagtggattggagggctgctctctcccccagatta 31979546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 5343527 - 5343492
Alignment:
Q  103 tctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5343527 tctcccctagattaggccacattggctgaactgggt 5343492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 1e-60; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 5732805 - 5732676
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5732805 gggtagatctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 5732706  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||||||||||||||    
T  5732705 ccagattaggccatattggctgaactgggt 5732676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 3814164 - 3814035
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3814164 gggtagatctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacactttcacatattggattggagagctgctctctccc 3814065  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||||||||||||||    
T  3814064 ccagattaggccatattggctgaactgggt 3814035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 45357247 - 45357370
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45357247 atctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 45357346  T
Q  115 taggccacattggctgaactgggt 138  Q
    || |||| ||||||||||||||||    
T  45357347 tatgccatattggctgaactgggt 45357370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 51520592 - 51520468
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51520592 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 51520493  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| |||||| |||||||||    
T  51520492 ttaggccatattggcagaactgggt 51520468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 9224358 - 9224481
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9224358 tctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 9224457  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  9224458 taggccatattggctgaactgggt 9224481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 9229145 - 9229268
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9229145 tctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 9229244  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  9229245 taggccatattggctgaactgggt 9229268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 56146664 - 56146783
Alignment:
Q  18 tagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56146664 tagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagatta 56146763  T
Q  117 ggccacattggctgaactgg 136  Q
    ||||| ||||||||||||||    
T  56146764 ggccatattggctgaactgg 56146783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 45347767 - 45347891
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagat-tcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347767 atctagggtttgttcatgtgtaaagcttgaaggctagaggtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 45347866  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    ||| |||| ||||||||||||||||    
T  45347867 ttaagccatattggctgaactgggt 45347891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 18855860 - 18855738
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  18855860 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 18855762  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  18855761 taggccatattggctgaactgggt 18855738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 24742076 - 24741951
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24742076 atctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 24741978  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  24741977 gattaggccatattggctgaactgggt 24741951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 29760738 - 29760652
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29760738 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggt 29760652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 28468542 - 28468615
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  28468542 ttgtaacactttcatcatagtggattggagagctgctctctcctccagattaggtcatattggctgaactgggt 28468615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 36315229 - 36315304
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  36315229 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 36315304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 36329438 - 36329513
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  36329438 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 36329513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 10047505 - 10047401
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||    
T  10047505 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtca 10047407  T
Q  122 cattgg 127  Q
     |||||    
T  10047406 tattgg 10047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 5396643 - 5396746
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||     
T  5396643 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgcaacactttcatcatagtggattggagagctgctctctcctccagattaggtcat 5396741  T
Q  123 attgg 127  Q
    |||||    
T  5396742 attgg 5396746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 39246092 - 39246016
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  39246092 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 39246016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 16623292 - 16623359
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  16623292 ttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctcctccagattagg 16623359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 31985634 - 31985708
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| || |||||    
T  31985634 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctct-ccccagattaggtcatattgg 31985708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 3796502 - 3796594
Alignment:
Q  37 aagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||| ||||||  |||||||||| |||||||||||||||| ||||| |||||| ||||| |||||||||||||| |||||| || |||||    
T  3796502 aagcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattagagagttgctctctcccccatattaggtcatattgg 3796594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 5143345 - 5143281
Alignment:
Q  64 ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| || |||||    
T  5143345 ttttgtaacactttcatcatagtgggttggagagctgctctctcccccagattaggtcatattgg 5143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 5269204 - 5269266
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  5269204 ttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 5269266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 16630651 - 16630744
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  16630651 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgttctctcctccagatta 16630744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 38152449 - 38152503
Alignment:
Q  63 cttttgtaacactttctc-atattggattggagagctgctctctcccccagatta 116  Q
    |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  38152449 cttttgtaacactttcaccatagtggattggagagctgctctctcccccagatta 38152503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 5147803 - 5147699
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaacc-ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  ||||||||||||||| ||||| |||| ||||||||||||| |||||||| |||||| ||    
T  5147803 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactattttgtaacactttcatcataatggactggagagctgctccctcccccaaattaggtca 5147705  T
Q  122 cattgg 127  Q
     |||||    
T  5147704 tattgg 5147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 24333896 - 24333831
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||| || |||||    
T  24333896 cttttgtaacacgttcatcatagtggattggagagctgctctctcccccaaattaggtcatattgg 24333831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 3777674 - 3777580
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||| ||||||| | ||| ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||| |||||||| | ||||||||    
T  3777674 ttgttcttgtgtaa-gtttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctactctctcctctagattagg 3777580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 6743425 - 6743490
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||| || |||||    
T  6743425 cttttgtaacactttcatcatagtggattggagggctgctctctcccgtagattaggtcatattgg 6743490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 39774304 - 39774380
Alignment:
Q  53 ttcttgtaacct-tttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||| |||||| ||||||| |  || ||||||||||||||||||| ||||||||| |||| || |||||    
T  39774304 ttcttgtaacctatttgtatcactttcattttagtggattggagagctgctctatcccccagagtaggtcatattgg 39774380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 9587 - 9716
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9587 gggtagatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 9686  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||||||||||||||    
T  9687 ccagattaggccatattggctgaactgggt 9716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 3792 - 3845
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaac 62  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  3792 gggtagatctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaac 3845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 3e-58; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 28807518 - 28807646
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  28807518 gggtagatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacac-ttcacatattggattggagagctgctctctccc 28807616  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||    
T  28807617 ccagattaggccacattggctgaactgggt 28807646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 1457112 - 1457236
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1457112 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 1457211  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  1457212 ttaggccacattggctgaactgggt 1457236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 15044820 - 15044697
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15044820 atctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccatat 15044721  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  15044720 taggccatattggctgaactgggt 15044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 43592414 - 43592290
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43592414 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 43592315  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  43592314 ttaggccatattggctgaactgggt 43592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 37556573 - 37556696
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37556573 tctagggtttgttcatgtgtaaagcttgataagctagatacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 37556672  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  37556673 taggccacattggctgaactgggt 37556696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 37561395 - 37561518
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37561395 tctagggtttgttcatgtgtaaagcttgataagctagatacttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 37561494  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  37561495 taggccacattggctgaactgggt 37561518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 43598859 - 43598737
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43598859 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 43598760  T
Q  114 ttaggccacattggctgaactgg 136  Q
    |||||||| ||||||||||||||    
T  43598759 ttaggccatattggctgaactgg 43598737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 43604351 - 43604229
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43604351 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 43604252  T
Q  114 ttaggccacattggctgaactgg 136  Q
    |||||||| ||||||||||||||    
T  43604251 ttaggccatattggctgaactgg 43604229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 43609843 - 43609721
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43609843 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 43609744  T
Q  114 ttaggccacattggctgaactgg 136  Q
    |||||||| ||||||||||||||    
T  43609743 ttaggccatattggctgaactgg 43609721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 27449949 - 27449825
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27449949 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 27449850  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||| | ||||||||||||||||    
T  27449849 ttaggctatattggctgaactgggt 27449825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 27445105 - 27444981
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27445105 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 27445006  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||| | |||| |||||||||||    
T  27445005 ttaggctatattgcctgaactgggt 27444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 30631542 - 30631420
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||| ||||||||||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30631542 atctatggtttgttcatgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctcccccag 30631443  T
Q  113 attaggccacattggctgaactg 135  Q
    |||||||||||||||||||||||    
T  30631442 attaggccacattggctgaactg 30631420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 2785510 - 2785386
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  2785510 tctagggtttgttcatgagtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 2785411  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  2785410 ttaggccacattggctgaactgggt 2785386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 33768314 - 33768190
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  33768314 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctcccccccaga 33768215  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  33768214 ttaggccacattggctgaactgggt 33768190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 33791451 - 33791327
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  33791451 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctttcccccaga 33791352  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  33791351 ttaggccacattggctgaactgggt 33791327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 31180349 - 31180225
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||||||||| | ||||||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180349 atctagggtttgt-cttgtgtaaagcttgaaggctagagtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctcccccag 31180251  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  31180250 attaggccatattggctgaactgggt 31180225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 31396934 - 31397067
Alignment:
Q  9 gggtggatctagggtttgtt--catgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctc 104  Q
    |||| |||||||||||| ||  | |||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  31396934 gggtagatctagggttttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctc 31397033  T
Q  105 tcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||||    
T  31397034 tcccccagattaggccacattggctgaactgggt 31397067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 31401815 - 31401924
Alignment:
Q  31 tgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccacattggc 128  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31401815 tgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccatattaggccacattggc 31401914  T
Q  129 tgaactgggt 138  Q
    ||||||||||    
T  31401915 tgaactgggt 31401924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 38192270 - 38192184
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38192270 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 38192184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 38219495 - 38219409
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38219495 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 38219409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 35387759 - 35387673
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  35387759 ttcttgtaaccctttgtaacactttcatcatagtagattggagagctgctctctcccccagattaggccatattggctgaattgggt 35387673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 24135945 - 24135859
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| || || || |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  24135945 ttcttgtaaccctttgtaacactttcatcttagtgcattggatagctgctctctcccccagattaggccatattggctgaactgggt 24135859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 10281877 - 10281773
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||    
T  10281877 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctcccccagatcaggtca 10281779  T
Q  122 cattgg 127  Q
     |||||    
T  10281778 tattgg 10281773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 9353304 - 9353407
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| |||||   ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||     
T  9353304 ttgttcttgtgtaa-gcttgcaagcttttttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcat 9353402  T
Q  123 attgg 127  Q
    |||||    
T  9353403 attgg 9353407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 36932350 - 36932425
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  36932350 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 36932425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 15464629 - 15464564
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattag 117  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15464629 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattag 15464564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 3880425 - 3880321
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| || |||  |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||| ||    
T  3880425 ttgttcttgtgtaa-gcttgtaaactaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctgcctcagattaggtca 3880327  T
Q  122 cattgg 127  Q
     |||||    
T  3880326 tattgg 3880321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 11916943 - 11917047
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| || |||  |||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||| ||    
T  11916943 ttgttcttgtgtaa-gcttgcaaactattttcttgtaactcttttgtaacactttcattatagtggattggagagctgctctctcccccatattaggtca 11917041  T
Q  122 cattgg 127  Q
     |||||    
T  11917042 tattgg 11917047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 14520355 - 14520252
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| ||||| ||||||| |||||||||||| |||| |||||||| ||     
T  14520355 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattgaagagctgctctcccccctagattaggtcat 14520257  T
Q  123 attgg 127  Q
    |||||    
T  14520256 attgg 14520252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 12084175 - 12084241
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||    
T  12084175 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctgccccatattagg 12084241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 28832356 - 28832281
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || |||||||||| ||||||||||||||||||||||| || |||||    
T  28832356 ttcttgtaactcattgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattgg 28832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 19588844 - 19588778
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattag 117  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||  |||||||    
T  19588844 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctccctaagattag 19588778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 17003970 - 17004035
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||| || |||||    
T  17003970 cttttgaaatactttcatcatagtggattgaagagctgctctctcccccagattaggtcatattgg 17004035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 4410241 - 4410283
Alignment:
Q  85 tggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  4410241 tggattggagagctgctctctcccccagactaggtcagattgg 4410283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 42127410 - 42127476
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||   ||||||||||||| || || |||||||| | |||||||||||||||||||||||    
T  42127410 ttcttgtaactcattgtaacactttcatcttagtggattggggggctgctctctcccccagattagg 42127476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 118
Target Start/End: Original strand, 27910675 - 27910702
Alignment:
Q  91 ggagagctgctctctcccccagattagg 118  Q
    ||||||||||||||||||||||||||||    
T  27910675 ggagagctgctctctcccccagattagg 27910702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 3e-58; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 18656575 - 18656446
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 108  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18656575 gggtagatctagggtttgttcatgtgtaaagcttgaatgctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctccc 18656476  T
Q  109 ccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||||||||||||||    
T  18656475 ccagattaggccatattggctgaactgggt 18656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 22173145 - 22173269
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22173145 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 22173244  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  22173245 ttaggccatattggctgaactgggt 22173269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 2672874 - 2673005
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  2672874 gggtagatctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctc 2672973  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  2672974 ccccagattaggccacattggctgaactgggt 2673005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 2677030 - 2677161
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  2677030 gggtagatctagggttttgtcatgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctc 2677129  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  2677130 ccccagattaggccacattggctgaactgggt 2677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 28503825 - 28503950
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||||||| ||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28503825 atctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctcttccccag 28503924  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  28503925 attaggccatattggctgaactgggt 28503950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 8512352 - 8512228
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8512352 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 8512253  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  8512252 ttaggccacattggctgaactgggt 8512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 8517232 - 8517108
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8517232 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 8517133  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  8517132 ttaggccacattggctgaactgggt 8517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 24968249 - 24968118
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttgaa-agctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||    
T  24968249 gggtagatctcgggtttgttcatgtgtaaagcttgaatagctagattcttgtaactcttttgtaacacattcacatattggattggagagctactctctc 24968150  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||| | |||| |||||||||||||||||||||    
T  24968149 cccaaaattaagccacattggctgaactgggt 24968118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 7167380 - 7167255
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  7167380 atctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 7167282  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  7167281 gattaggccatattggctgaactgggt 7167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 32475618 - 32475496
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||  ||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  32475618 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagat 32475520  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  32475519 taggccacattggctgaactgggt 32475496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 32480476 - 32480354
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||  ||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  32480476 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactctttgtaa-acattcacatattggattggagagctgctctctcccccagat 32480378  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  32480377 taggccacattggctgaactgggt 32480354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 8739024 - 8739149
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  8739024 atctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 8739122  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  8739123 gattaggccatattggctgaactgggt 8739149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 9091262 - 9091387
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  9091262 atctagggattgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 9091360  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  9091361 gattaggccatattggctgaactgggt 9091387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 40372757 - 40372881
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagatt-cttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccag 112  Q
    |||||||| |||||| ||||||| ||||| ||||||  || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40372757 atctagggcttgttcttgtgtaa-gcttgcaagctatttttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccag 40372855  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  40372856 attaggccatattggctgaactgggt 40372881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 2671586 - 2671672
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2671586 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggt 2671672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 8477459 - 8477373
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8477459 ttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggt 8477373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 28501658 - 28501750
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctct 105  Q
    ||||||||||| ||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28501658 atctagggtttattcttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctct 28501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 26928591 - 26928677
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  26928591 ttcttgtaaccctttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattggctgaactgggt 26928677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 1306045 - 1305959
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| || || ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  1306045 ttcttgtaaccctttgtaacactttcatcgtagtggattggagagctgctatctcccctagattaggccatattggctgaactgggt 1305959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 16264463 - 16264372
Alignment:
Q  37 aagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||| ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  16264463 aagcttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 16264372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 32143418 - 32143343
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  32143418 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 32143343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 8370448 - 8370551
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||  ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||     
T  8370448 ttgttcttgtgtaa-gcttttaagctaatttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcat 8370546  T
Q  123 attgg 127  Q
    |||||    
T  8370547 attgg 8370551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 27453055 - 27452980
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| || |||||    
T  27453055 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccggattaggtcatattgg 27452980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 27974942 - 27975017
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  27974942 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 27975017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 18552844 - 18552948
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||    
T  18552844 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtca 18552942  T
Q  122 cattgg 127  Q
     |||||    
T  18552943 tattgg 18552948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 36029219 - 36029115
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| | ||| ||||||  |||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||    
T  36029219 ttgttcttgtgtaa-gtttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctttctcccccagattaggtca 36029121  T
Q  122 cattgg 127  Q
     |||||    
T  36029120 tattgg 36029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 1736294 - 1736370
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  1736294 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 1736370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 48438312 - 48438236
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  48438312 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 48438236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 6794703 - 6794778
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||||    
T  6794703 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgg 6794778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 21711320 - 21711245
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| || |||||    
T  21711320 ttcttgtaactctttgtaacactttcatcatagtggatttgagagctgctctctcccccagattaggtcatattgg 21711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 27986449 - 27986511
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  27986449 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 27986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 33386669 - 33386731
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  33386669 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 33386731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 40592742 - 40592847
Alignment:
Q  23 tttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcc 120  Q
    ||||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||| ||||| | |||||||||||| ||||||||| ||||||||| |    
T  40592742 tttgttcttgtgtaa-gcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtcgattggagagcttctctctcccacagattaggtc 40592840  T
Q  121 acattgg 127  Q
    | |||||    
T  40592841 atattgg 40592847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 30709779 - 30709855
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  30709779 ttcttgtaactcttttgtaacaatttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 30709855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 10207983 - 10207945
Alignment:
Q  100 ctctctcccccagattaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10207983 ctctctcccccagattaggccacattggctgaactgggt 10207945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 3715963 - 3716067
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| | ||| ||||||  |||||||||| |||||||||||||||| ||||| | |||||||||||||||||||| || |||||||| ||    
T  3715963 ttgttcttgtgtaa-gtttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtagattggagagctgctctctctcctagattaggtca 3716061  T
Q  122 cattgg 127  Q
     |||||    
T  3716062 tattgg 3716067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 26299086 - 26299021
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||| |||||||||||||||| ||||| | |||||||| |||||||||||||||||||||    
T  26299086 ttcttgtaactcttttgtaacactttcatcatagtagattggagggctgctctctcccccagatta 26299021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 25795879 - 25795803
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||| ||||||||||| || || | |||||||||||||||||||||||||||||||| || |||||    
T  25795879 ttcttgtaactctttcgtaacactttcatcttagtagattggagagctgctctctcccccagattaggtcatattgg 25795803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 40844777 - 40844674
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||| ||| |||||||||| |||||||||||| ||    
T  40844777 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggatttgagggctgctctct-ccccagattaggtca 40844680  T
Q  122 cattgg 127  Q
     |||||    
T  40844679 tattgg 40844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 4386947 - 4386983
Alignment:
Q  82 tattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4386947 tattggattggagagctgctctctcccccagagtagg 4386983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 37466388 - 37466313
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || |||||||||| ||| ||||||||||||||||||| || |||||    
T  37466388 ttcttgtaactcattgtaacactttcatcttagtggattggagggctactctctcccccagattaggtcatattgg 37466313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 1417493 - 1417555
Alignment:
Q  66 ttgtaacactttct-catattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||| | || |||||||||| | ||||||||||||||||||||| || |||||    
T  1417493 ttgtaacactttcttcttagtggattggagggatgctctctcccccagattaggtcatattgg 1417555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 39039995 - 39040057
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||| ||||| |||||||||||| || ||||| |||||||||||| || |||||    
T  39039995 ttgtaacactttcatcatagtggattggagagttgttctcttccccagattaggtcatattgg 39040057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 53894119 - 53894082
Alignment:
Q  81 atattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  53894119 atattggattggagggctgctctctcccccagactagg 53894082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 47923895 - 47923971
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||| ||||||| ||||| | ||||| || |||||||||||||| |||||||| || |||||    
T  47923895 ttcttgtaactcttttgtagcactttcatcatagtagattgaagggctgctctctcccctagattaggtcatattgg 47923971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 3323680 - 3323755
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || |||||||||| |||| |||||| ||||||||||| || |||||    
T  3323680 ttcttgtaactcattgtaacactttcatcttagtggattggagggctgttctctctcccagattaggtcatattgg 3323755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 5e-57; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 25328229 - 25328352
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25328229 atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 25328328  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  25328329 taggccatattggctgaactgggt 25328352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7289879 - 7290000
Alignment:
Q  18 tagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7289879 tagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagatta 7289978  T
Q  117 ggccacattggctgaactgggt 138  Q
    ||||| ||||||||||||||||    
T  7289979 ggccatattggctgaactgggt 7290000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 35745526 - 35745402
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35745526 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 35745427  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  35745426 ttaggccacattggctgaactgggt 35745402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 39784774 - 39784896
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  39784774 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 39784872  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  39784873 taggccatattggctgaactgggt 39784896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 6311432 - 6311308
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga--ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||||||||| | ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311432 atctagggtttgt-cttgtgtaaagcttgaaggctagagtttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 6311334  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  6311333 attaggccatattggctgaactgggt 6311308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 10684214 - 10684338
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  10684214 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 10684313  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  10684314 ttaggccacattggctgaactgggt 10684338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 33037768 - 33037892
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33037768 atctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctcccccag 33037866  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  33037867 attaggccatattggctgaactgggt 33037892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 36979513 - 36979388
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  36979513 atctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 36979415  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  36979414 gattaggccatattggctgaactgggt 36979388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 30655782 - 30655657
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  30655782 atctagggtttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattagattggagagctgctctctccccca 30655684  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  30655683 gattaggccatattggctgaactgggt 30655657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 18853128 - 18853254
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaacc-ttttgtaacactttc-tcatattggattggagagctgctctctccccc 110  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  18853128 atctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctgctctctccccc 18853226  T
Q  111 agattaggccacattggctgaactgggt 138  Q
    ||||||||||| ||||||||||||||||    
T  18853227 agattaggccatattggctgaactgggt 18853254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 4760036 - 4760161
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  4760036 atctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 4760134  T
Q  112 gattaggccacattggctgaactgggt 138  Q
     ||||||||| ||||||||||||||||    
T  4760135 tattaggccatattggctgaactgggt 4760161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 10689104 - 10689229
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  10689104 atctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctctgtaacactttcatcatattggattggagagctgctctctccccca 10689202  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  10689203 gattaggccatattggctgaactgggt 10689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 18870522 - 18870648
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaacc-ttttgtaacactttc-tcatattggattggagagctgctctctccccc 110  Q
    ||||||||||||||| ||||||| ||||||| ||||  | ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  18870522 atctagggtttgttcttgtgtaa-gcttgaatgctattgtttcttgtaacccttttgtaacactttcattatattggattggagagctgctctctccccc 18870620  T
Q  111 agattaggccacattggctgaactgggt 138  Q
    ||||||||||| ||||| ||||||||||    
T  18870621 agattaggccatattggatgaactgggt 18870648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 1261954 - 1262040
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  1261954 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggttgaactgggt 1262040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 26287985 - 26287912
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26287985 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 26287912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 26301242 - 26301169
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26301242 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 26301169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 26313236 - 26313163
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26313236 ttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 26313163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 4456153 - 4456050
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| |||||  |||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||     
T  4456153 ttgttcttgtgtaa-gcttgccagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccat 4456055  T
Q  123 attgg 127  Q
    |||||    
T  4456054 attgg 4456050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 31071229 - 31071304
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  31071229 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 31071304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 26403240 - 26403305
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  26403240 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 26403305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 7412466 - 7412363
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||| ||  ||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||     
T  7412466 ttgttcttgtgtaa-gcttgcaagttattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcat 7412368  T
Q  123 attgg 127  Q
    |||||    
T  7412367 attgg 7412363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 19175754 - 19175829
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| || |||||    
T  19175754 ttcttgtaactctttgtaacactttcatcatagtggattggagagttgctctctcccccagattaggtcatattgg 19175829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 23799548 - 23799652
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||| ||| |||||| ||    
T  23799548 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcctccaaattaggtca 23799646  T
Q  122 cattgg 127  Q
     |||||    
T  23799647 tattgg 23799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 6127319 - 6127243
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| || |||||    
T  6127319 ttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctcttccccaaattaggtcatattgg 6127243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 4696609 - 4696671
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  4696609 ttgtaactctttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 4696671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 9765852 - 9765894
Alignment:
Q  85 tggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  9765852 tggattggagagctgctctctcccccagattaggtcatattgg 9765894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 5702482 - 5702558
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| |||||  ||||||||| | |||||||||||||| |||||| || |||||    
T  5702482 ttcttgtaactcttttgtaacactttcatcataggggattggagggatgctctctcccccatattaggtcatattgg 5702558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 19752394 - 19752469
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || ||||||||||||||||||||||||| ||| |||| || |||||    
T  19752394 ttcttgtaactcattgtaacactttcatcttagtggattggagagctgctctctcccctagactaggtcatattgg 19752469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 6813796 - 6813723
Alignment:
Q  38 agcttgaaagctagattcttgtaacct-tttgtaacactttc-tcatattggattggagagctgctctctcccc 109  Q
    |||||| ||||||  |||||||||||  |||||  ||||||| || ||||||||||||||||||||||||||||    
T  6813796 agcttgcaagctaatttcttgtaacccctttgtgtcactttcatcttattggattggagagctgctctctcccc 6813723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 18810982 - 18811015
Alignment:
Q  85 tggattggagagctgctctctcccccagattagg 118  Q
    |||||||||| |||||||||||||||||||||||    
T  18810982 tggattggagggctgctctctcccccagattagg 18811015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 2e-56; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 32246922 - 32246804
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32246922 atctagggtttgttcatgtgtaaagcttgaaagctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 32246823  T
Q  115 taggccacattggctgaac 133  Q
    ||||||| |||||||||||    
T  32246822 taggccatattggctgaac 32246804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 39811939 - 39812060
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39811939 atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 39812038  T
Q  115 taggccacattggctgaactgg 136  Q
    ||||||| ||||||||||||||    
T  39812039 taggccatattggctgaactgg 39812060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 44312574 - 44312698
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312574 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 44312673  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  44312674 ttaggccatattggctgaactgggt 44312698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 19344556 - 19344432
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||    
T  19344556 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctaga 19344457  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  19344456 ttaggccacattggctgaactgggt 19344432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 19349414 - 19349290
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaa-gctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||    
T  19349414 tctagggtttgttcatgtgtaaagcttgaaaagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccctaga 19349315  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  19349314 ttaggccacattggctgaactgggt 19349290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 11098888 - 11099013
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    ||||||||||||||| ||||||| ||||| ||||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11098888 atctagggtttgttcttgtgtaa-gcttgcaagctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 11098986  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  11098987 gattaggccatattggctgaactgggt 11099013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 14291624 - 14291499
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  14291624 atctagggcttgttcttgtgtaa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 14291526  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  14291525 gattaggccatattggctgaactgggt 14291499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 9296362 - 9296487
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||| ||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  9296362 atctagggcttgttcttgtataa-gcttgaaggctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 9296460  T
Q  112 gattaggccacattggctgaactgggt 138  Q
     ||||||||| ||||||||||||||||    
T  9296461 aattaggccatattggctgaactgggt 9296487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 3491847 - 3491761
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3491847 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 3491761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 25398592 - 25398506
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  25398592 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactgggt 25398506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 25403730 - 25403647
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactg 135  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  25403730 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattggctgaactg 25403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 8040188 - 8040070
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac---cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggc 119  Q
    |||||| ||||||| ||||| ||||||  ||||||||||   |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||     
T  8040188 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaactctcttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggt 8040090  T
Q  120 cacattgg-ctgaactgggt 138  Q
    || ||||| |||||||||||    
T  8040089 catattggactgaactgggt 8040070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 25407719 - 25407653
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  25407719 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 25407653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 13569454 - 13569350
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| |||||||| |||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||    
T  13569454 ttgttcttgtgtaaa-cttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtca 13569356  T
Q  122 cattgg 127  Q
     |||||    
T  13569355 tattgg 13569350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 28259149 - 28259252
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||     
T  28259149 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccaaattaggtcat 28259247  T
Q  123 attgg 127  Q
    |||||    
T  28259248 attgg 28259252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 10445415 - 10445519
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| | ||| ||||||  |||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||    
T  10445415 ttgttcttgtgtaa-gattgtaagctaatttcttgtaactcttttgtaacactttcataatagtggattggagagctgctctctcccccagattaggtca 10445513  T
Q  122 cattgg 127  Q
     |||||    
T  10445514 tattgg 10445519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 40738926 - 40738854
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  40738926 ttgtaacactttcatcatagtggattggagagctgctctc-cccccagattaggtcatattggctgaactgggt 40738854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 21630041 - 21629954
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg-ctgaactgggt 138  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| || ||||| |||||||||||    
T  21630041 ttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctct-ccccagattaggtcatattggactgaactgggt 21629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 34388956 - 34388880
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| || |||||    
T  34388956 ttcttgtaactcttttgtaacactttcatcatagtggattggagagctactctctcccccagattaggtcatattgg 34388880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 8390133 - 8390216
Alignment:
Q  37 aagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||| ||||||  |||||||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  8390133 aagcttgtaagctaatttcttgtaactcttttttaacactttcatcatagtggattggagagctgctctctcccccaaattagg 8390216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 34682305 - 34682398
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||| ||||||| || || ||||||  |||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  34682305 ttgttcttgtgtaa-gcctgtaagctaatttcttgtaactcttttgtaacactttcattatagtggattggagagctgctctctcccccagatta 34682398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 10707223 - 10707327
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||| ||||| |||||||||||| || ||||||||||| |||||| ||    
T  10707223 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagttgttctctcccccatattaggtca 10707321  T
Q  122 cattgg 127  Q
     |||||    
T  10707322 tattgg 10707327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 17865329 - 17865213
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||| ||    
T  17865329 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtca 17865231  T
Q  122 catt-ggctgaactgggt 138  Q
     ||| | |||||||||||    
T  17865230 tattcgactgaactgggt 17865213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 20522318 - 20522242
Alignment:
Q  53 ttcttgtaacc-ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||| || |||||    
T  20522318 ttcttgtaacccttttgtaacactttcatcatagtggattggagggttgctctctcccccagattaggtcatattgg 20522242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 14698979 - 14699082
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||| ||    
T  14698979 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaac-ctttcatcatagtggattggagggctgctctctcccccagattaggtca 14699076  T
Q  122 cattgg 127  Q
     |||||    
T  14699077 tattgg 14699082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 23078442 - 23078545
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  ||| |||||||||| ||||| |||||||||||| || ||||||||||| |||||| ||     
T  23078442 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttctaacactttcatcatagtggattggagagttgttctctcccccatattaggtcat 23078540  T
Q  123 attgg 127  Q
    |||||    
T  23078541 attgg 23078545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 31056131 - 31056075
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||||||||| || || ||||||||||||||||||||||||| ||||||||    
T  31056131 cttttgtaacactttcatcttagtggattggagagctgctctctcccctagattagg 31056075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 42039669 - 42039744
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  || ||||||||||| ||||| |||||| ||||||||||||||||| ||||||||| || |||||    
T  42039669 ttcttgtaactcttcgtaacactttcatcatagtggattagagagctgctctctcccacagattaggtcatattgg 42039744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 36757728 - 36757837
Alignment:
Q  18 tagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||| ||||||| ||||||| |||||||||||   ||||| ||||  |||| ||||||||| ||||| ||||||||||||||| | || |||||||||||    
T  36757728 taggttttgttcttgtgtaa-gcttgaaagcttttttcttataactctttgaaacactttcatcatactggattggagagctgttatcccccccagatta 36757826  T
Q  117 ggccacattgg 127  Q
    || || |||||    
T  36757827 ggtcatattgg 36757837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 33118262 - 33118158
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaacc-ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  ||||||||||  ||||||||| ||||| ||||| |||||||||| |||||||||||||||| |||||| ||    
T  33118262 ttgttcttgtgtaa-gcttataagctaatttcttgtaactattttgtaactctttcatcatagtggattggagggctgctctctcccccaaattaggtca 33118164  T
Q  122 cattgg 127  Q
     |||||    
T  33118163 tattgg 33118158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 39483057 - 39482953
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| ||||||||||| |||| ||||| ||||||||||  ||||||||||||||| |||||| ||    
T  39483057 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacattttcatcatagtggattggaggcctgctctctcccccatattaggtca 39482959  T
Q  122 cattgg 127  Q
     |||||    
T  39482958 tattgg 39482953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 16940219 - 16940273
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||||    
T  16940219 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagatta 16940273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 17010884 - 17010938
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagatta 116  Q
    |||||||||||||||| ||||| |||||||||| |||| ||| ||||||||||||    
T  17010884 cttttgtaacactttcatcatagtggattggagggctgatctttcccccagatta 17010938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 33528620 - 33528696
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| | ||||||||  |||| |||||| || |||||    
T  33528620 ttcttgtaactcttttgtaacactttcatcatagtggattggagggttgctctctttcccatattaggtcatattgg 33528696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 27149306 - 27149353
Alignment:
Q  65 tttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||||    
T  27149306 tttgtatcactttcattatagtggattggagagctgctctctccccca 27149353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 1e-54; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 24024277 - 24024400
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024277 atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaacattttgtaacactttctcatattggattggagagctgctctctcccccagat 24024376  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  24024377 taggccatattggctgaactgggt 24024400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 19992447 - 19992324
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19992447 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactttcacatattggattggagagctgctctctcccccagat 19992348  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  19992347 taggccatattggctgaactgggt 19992324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 31109534 - 31109657
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31109534 atctagggtttgttcatgtgcaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccctagat 31109633  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  31109634 taggccatattggctgaactgggt 31109657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 12406466 - 12406342
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12406466 atctagggtttgttcatgtgtaaagcttgaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctattctctcccccaga 12406367  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  12406366 ttaggccatattggctgaactgggt 12406342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 12397046 - 12396922
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12397046 atctagggtttgttcatgtgtaaagattaaaggctagagttcttgtaaccttttgtaacactttctcatattggattggagagctgttctctcccccaga 12396947  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||| ||||||||||||||||    
T  12396946 ttaggccatattggctgaactgggt 12396922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 24261273 - 24261397
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  24261273 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 24261372  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  24261373 ttaggccacattggctgaactgggt 24261397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 24266152 - 24266276
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  24266152 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 24266251  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  24266252 ttaggccacattggctgaactgggt 24266276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 16880207 - 16880084
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||  ||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  16880207 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagat 16880108  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  16880107 taggccacattggctgaactgggt 16880084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 16885063 - 16884940
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||  ||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  16885063 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactctttgtaaaacattcacatattggattggagagctgctctctcccccagat 16884964  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||    
T  16884963 taggccacattggctgaactgggt 16884940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 21812182 - 21812312
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagctt-ga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||| |||| | |||||||||||||| ||||||||||||    
T  21812182 gggtagatctagggtttgttcatgtgtaaagctttgacaagctagagtcttggaaccttttgtaagactt-cacatattggattggaaagctgctctctc 21812280  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  21812281 ccccagattaggccacattggctgaactgggt 21812312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 20357508 - 20357633
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||||  ||||| ||||||||||||||| ||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  20357508 atctagggcatgttcttgtgtaaagcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctctcccccaa 20357607  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  20357608 attaggccatattggctgaactgggt 20357633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 2058101 - 2057976
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctccccca 111  Q
    |||||||| |||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2058101 atctagggcttgttcttgtgtaa-gcttgaatgctattgtttcttgtaaccctttgtaacactttcatcatattggattggagagctgctctctccccca 2058003  T
Q  112 gattaggccacattggctgaactgggt 138  Q
    |||||||||| ||||||||||||||||    
T  2058002 gattaggccatattggctgaactgggt 2057976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 4866820 - 4866741
Alignment:
Q  59 taaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4866820 taaccttttgtaacactttctcatattggattggagagctgctctctcccccagattaggccatattggctgaactgggt 4866741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 1533444 - 1533530
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  1533444 ttcttgtaaccctttgtaacactttcatcatattggattggagagatgctctctcccccagattaggccatattggctgaactgggt 1533530  T

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Target: chr7; HSP #15
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 18408860 - 18408774
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18408860 ttcttgtaaccctttgtaacactttcatcatactggattggagagctgctctctcccccagattaggccatattggctgaactgggt 18408774  T

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Target: chr7; HSP #16
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 21639905 - 21639819
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21639905 ttcttgtaaccctttgtaacactttcattatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 21639819  T

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Target: chr7; HSP #17
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 18413736 - 18413651
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  18413736 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccc-agattaggccatattggctgaactgggt 18413651  T

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Target: chr7; HSP #18
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 21646103 - 21646017
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  21646103 ttcttgtaaccctttttaacactttcatcatagtggattggagagctgctctcttccctagattaggccatattggctgaactgggt 21646017  T

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Target: chr7; HSP #19
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 29159929 - 29159825
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||    
T  29159929 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctcccctagattaggtca 29159831  T
Q  122 cattgg 127  Q
     |||||    
T  29159830 tattgg 29159825  T

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Target: chr7; HSP #20
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 21983411 - 21983306
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaacc--ttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcc 120  Q
    |||||| ||||||| ||||| ||||||  ||||||||||   ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |    
T  21983411 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtc 21983313  T
Q  121 acattgg 127  Q
    | |||||    
T  21983312 atattgg 21983306  T

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Target: chr7; HSP #21
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 44848684 - 44848750
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  44848684 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccaggttagg 44848750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 2647667 - 2647771
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||| ||    
T  2647667 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagaataggtca 2647765  T
Q  122 cattgg 127  Q
     |||||    
T  2647766 tattgg 2647771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 46516281 - 46516385
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||| ||    
T  46516281 ttgttcttgtgtaa-gcttttaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccctagattaggtca 46516379  T
Q  122 cattgg 127  Q
     |||||    
T  46516380 tattgg 46516385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 2580515 - 2580412
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||   ||||||||||||| || || ||||||||||||||||||||||||||||| |||| ||     
T  2580515 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactcattgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcat 2580417  T
Q  123 attgg 127  Q
    |||||    
T  2580416 attgg 2580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 49091759 - 49091683
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||| || |||||    
T  49091759 ttcttgtaactcttttgtaacactttcatcatagtggattggagagttgctctcttccccagattaggtcatattgg 49091683  T

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Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 33332449 - 33332516
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||| |||||||||||||||| || || |||||||||| |||||||||||||||||||||||    
T  33332449 ttcttgtaactcttttgtaacactttcatcttagtggattggagggctgctctctcccccagattagg 33332516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 56073 - 55970
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||| ||    
T  56073 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctct-ccccagattaggtca 55976  T
Q  122 cattgg 127  Q
     |||||    
T  55975 tattgg 55970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 9190008 - 9190083
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || ||||||||||||||||||||||||||||| |||| || |||||    
T  9190008 ttcttgtaactcattgtaacactttcatcttagtggattggagagctgctctctcccccagactaggtcatattgg 9190083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 20284186 - 20284111
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || |||||||||| ||||||||||||||||||||||| || |||||    
T  20284186 ttcttgtaacgcattgtaacactttcatcttagtggattggagggctgctctctcccccagattaggtcatattgg 20284111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 35960901 - 35960847
Alignment:
Q  65 tttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||    
T  35960901 tttgtaacactttcatcatagtggtttggagggctgctctctcccccagattagg 35960847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 4796638 - 4796733
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||| ||||||| ||||  ||||||  |||||||||| ||||||||||| |||| ||||| |||||| ||| |||||| ||||||||||||||||    
T  4796638 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacaatttcatcatagtggatttgagggctgctttctcccccagattagg 4796733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 2479461 - 2479368
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||| ||||||| ||||| ||||||  ||||| ||||  |||||||||||||| ||||| |||||| ||||||||||||| |||| ||||||||    
T  2479461 ttgttcttgtgtaa-gcttgcaagctattttcttataactctttgtaacactttcatcatagtggatttgagagctgctctc-cccctagattagg 2479368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 28617258 - 28617300
Alignment:
Q  85 tggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||||||||||||||||||||| |||| || |||||    
T  28617258 tggattggagagctgctctctcccccagagtaggtcatattgg 28617300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 9185178 - 9185231
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||||| || || |||||||||||||| |||||||||||||| ||||    
T  9185178 ttgtaacactttcatcttagtggattggagagcttctctctcccccagactagg 9185231  T

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Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 25445040 - 25445163
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25445040 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 25445139  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  25445140 taggccatattggctgaactgggt 25445163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 41390715 - 41390592
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41390715 atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 41390616  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||| ||||||    
T  41390615 taggccatattggctgatctgggt 41390592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 41398370 - 41398247
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41398370 atctagggtttgttcatgtgtaaagcttgaaggctagagtcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 41398271  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||| ||||||    
T  41398270 taggccatattggctgacctgggt 41398247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 39445633 - 39445511
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  39445633 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 39445535  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  39445534 taggccatattggctgaactgggt 39445511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 44023825 - 44023947
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  44023825 tctagggtttgttcatgtgtaaagcttgacaagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 44023923  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  44023924 taggccatattggctgaactgggt 44023947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 1054963 - 1055085
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  1054963 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagttgctctctcccccagat 1055061  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  1055062 taggccatattggctgaactgggt 1055085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 43988405 - 43988538
Alignment:
Q  9 gggtggatctagggtttgtt--catgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctc 104  Q
    |||| |||||||||||| ||  | |||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  43988405 gggtagatctagggttttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctc 43988504  T
Q  105 tcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||||    
T  43988505 tcccccagattaggccacattggctgaactgggt 43988538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 24787325 - 24787450
Alignment:
Q  15 atctagggtttgttcatgtgtaaagcttgaaagcta--gattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccag 112  Q
    ||||||| ||||||| ||||||| ||||||| ||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  24787325 atctaggatttgttcttgtgtaatgcttgaaggctattgtttcttgtaaccctttgtaacactttctcatattggattggagagctgctctcccccccag 24787424  T
Q  113 attaggccacattggctgaactgggt 138  Q
    ||||||||| ||||||||||||||||    
T  24787425 attaggccatattggctgaactgggt 24787450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 24202769 - 24202855
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24202769 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 24202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 19358843 - 19358929
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||| |||||||||||    
T  19358843 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggt 19358929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 19361432 - 19361518
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||| |||||||||||    
T  19361432 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggt 19361518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 19380072 - 19380158
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||| |||||||||||    
T  19380072 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccatattaggtcatattgactgaactgggt 19380158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 26644869 - 26644972
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||     
T  26644869 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcatcataatggattggagagctgctctctcccccagattaggtcat 26644967  T
Q  123 attgg 127  Q
    |||||    
T  26644968 attgg 26644972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 47703907 - 47704011
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  |||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||    
T  47703907 ttgttcttgtgtaa-gcttgtaagctaatttcttgtaattcttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtca 47704005  T
Q  122 cattgg 127  Q
     |||||    
T  47704006 tattgg 47704011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 3281833 - 3281730
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||     
T  3281833 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcatcatcgtggattggagagctgctctctcccccagattaggtcat 3281735  T
Q  123 attgg 127  Q
    |||||    
T  3281734 attgg 3281730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 21536541 - 21536635
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  21536541 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcattatagtggattggagagctgctctctcccccagattagg 21536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 27104371 - 27104438
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  27104371 ttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctctcccccagattagg 27104438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 16124515 - 16124591
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  16124515 ttcttgtaactcttttgtaacactttcatcatagtggattggagggctgctctctcccccagattaggtcatattgg 16124591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 19073026 - 19072950
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||| || |||||    
T  19073026 ttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattgg 19072950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 19120916 - 19120840
Alignment:
Q  53 ttcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||| || |||||    
T  19120916 ttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctctctcccccagattaggtcatattgg 19120840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 9476387 - 9476283
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| ||||||  ||||| |||| ||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||||| ||    
T  9476387 ttgttcttgtgtaa-gcttgtaagctaatttcttataactcttttgtaatactttcatcatagtggattggagagctgctctctcccctagattaggtca 9476289  T
Q  122 cattgg 127  Q
     |||||    
T  9476288 tattgg 9476283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 29651898 - 29651833
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||    
T  29651898 cttttgtaacactttcatcatagtggattggagtgctgctctctcccccagattaggtcatattgg 29651833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 13604623 - 13604689
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||  ||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||    
T  13604623 ttcttgtaactctttgtaacattttcatcatagtggattggagagctgctctctcccccatattagg 13604689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 775759 - 775694
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||| || |||||    
T  775759 cttttgtaacactttcatcttagtggattggagagctactctctcccccagattaggtcatattgg 775694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 13598485 - 13598420
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||| || |||||    
T  13598485 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattgg 13598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 37069864 - 37069792
Alignment:
Q  56 ttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||  |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| || |||||    
T  37069864 ttgtaactctttgtaacactttcatcatagtggatcggagagatgctctctcccccagattaggtcatattgg 37069792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 32889536 - 32889461
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||   ||||||||||||| || || ||||||||||||||||||| ||||||||| |||| || |||||    
T  32889536 ttcttgtaactcattgtaacactttcatcttagtggattggagagctgctctatcccccagactaggtcatattgg 32889461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 47098824 - 47098887
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagatt 115  Q
    ||||||||||   ||||||||||||| || || |||||||||| ||||||||||||||||||||    
T  47098824 ttcttgtaactcattgtaacactttcatcttagtggattggagggctgctctctcccccagatt 47098887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 25439847 - 25439875
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga 44  Q
    |||||||||||||||||||||||||||||    
T  25439847 tctagggtttgttcatgtgtaaagcttga 25439875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 104; Significance: 3e-52; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 35013 - 35136
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttgaaagctaga-ttcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013 tctagggtttgttcatgtgtaaagcttgaaggctagagttcttctaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 35112  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  35113 taggccatattggctgaactgggt 35136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 496 - 374
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaaccttttgtaacactttctcatattggattggagagctgctctctcccccagat 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  496 tctagggtttgttcatgtgtaaagcttgataagctagagtcttgtaaccttttgtaacactt-cacatattggattggagagctgctctctcccccagat 398  T
Q  115 taggccacattggctgaactgggt 138  Q
    ||||||| ||||||||||||||||    
T  397 taggccatattggctgaactgggt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 89; Significance: 3e-43; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 14259 - 14383
Alignment:
Q  16 tctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctcccccaga 113  Q
    ||||||||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  14259 tctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctgctctctcccccaga 14358  T
Q  114 ttaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||    
T  14359 ttaggccacattggctgaactgggt 14383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 19108 - 19239
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| ||||||||||||  || |||||||||||||| |||||||||||||||||| ||||||||||||  || ||||||| |||||||||||||||||||    
T  19108 gggtagatctagggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacactcacatattgtattggagagctgctctctc 19207  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||| ||||||||||||||    
T  19208 ccccagattaggccacaatggctgaactgggt 19239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 2194 - 2325
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| |||||| |||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||    
T  2194 gggtagatctatggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctactctctc 2293  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  2294 ccccagattaggccacattggctgaactgggt 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 148899 - 149030
Alignment:
Q  9 gggtggatctagggtttgttcatgtgtaaagcttga-aagctagattcttgtaac-cttttgtaacactttctcatattggattggagagctgctctctc 106  Q
    |||| |||||| |||||  || |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||    
T  148899 gggtagatctatggttttgtcttgtgtaaagcttgataagctagattcttgtaactcttttgtaacacattcacatattggattggagagctactctctc 148998  T
Q  107 ccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||||||||||||||||||||||||    
T  148999 ccccagattaggccacattggctgaactgggt 149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 67; Significance: 4e-30; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 17952 - 18038
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17952 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 18038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 24045 - 24131
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24045 ttcttgtaaccctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggccatattggctgaactgggt 24131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 181980 - 182038
Alignment:
Q  80 catattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  181980 catattggattggagagctgctctctcccccagattaggccacattggctgaactgggt 182038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 8419 - 8494
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||    
T  8419 ttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtcatattgg 8494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 43945 - 44022
Alignment:
Q  37 aagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccaga 113  Q
    ||||||| ||||||  ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  43945 aagcttgcaagctattttcttgtaactctttgtaacactttcatcatagtggattggagagctgctctctcccccaga 44022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 36804 - 36907
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccac 122  Q
    |||||| ||||||| ||||| ||||||  ||||||||||  |||||||||||||| ||||| ||| |||| |||||||||||| ||| |||||||| ||     
T  36804 ttgttcttgtgtaa-gcttgcaagctattttcttgtaactctttgtaacactttcatcatagtgggttggcgagctgctctcttccctagattaggtcat 36902  T
Q  123 attgg 127  Q
    |||||    
T  36903 attgg 36907  T

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Target: scaffold0036 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 85780 - 85693
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg-ctgaactgggt 138  Q
    ||||||||||  |||||||||||||| ||||  ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  85780 ttcttgtaactctttgtaacactttcatcatggtggattggagagccgctctctcccccagattaggtcatattggactgaactgggt 85693  T

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Target: scaffold0148 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 10855 - 10751
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggcca 121  Q
    |||||| ||||||| ||||| || |||  |||||||||| |||||||||||||||| || || ||||||||||||||||||||||||||| |||||| ||    
T  10855 ttgttcttgtgtaa-gcttgtaaactaatttcttgtaactcttttgtaacactttcatcttagtggattggagagctgctctctcccccaaattaggtca 10757  T
Q  122 cattgg 127  Q
     |||||    
T  10756 tattgg 10751  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 133280 - 133346
Alignment:
Q  53 ttcttgtaaccttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||  ||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||    
T  133280 ttcttgtaactctttgtaacattttcatcatagtggattggagagctgctctctcccccatattagg 133346  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 2579 - 2514
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||| || |||||    
T  2579 cttttgtaacactttcatcatagtggattggagggctgctgtctcccccagattaggtcatattgg 2514  T

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Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 5770 - 5705
Alignment:
Q  63 cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattaggccacattgg 127  Q
    |||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||| || |||||    
T  5770 cttttgtaacactttcatcatagtggattgaagggctgctctctcccccagattaggtcatattgg 5705  T

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Target: scaffold0098 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 45337 - 45284
Alignment:
Q  66 ttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  45337 ttgtaacgctttcatcatagtggattggagagctgctctctcccccagattagg 45284  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 11533 - 11500
Alignment:
Q  85 tggattggagagctgctctctcccccagattagg 118  Q
    ||||||||||||||||||||||||||||| ||||    
T  11533 tggattggagagctgctctctcccccagactagg 11500  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 17389 - 17294
Alignment:
Q  24 ttgttcatgtgtaaagcttgaaagctagattcttgtaac-cttttgtaacactttc-tcatattggattggagagctgctctctcccccagattagg 118  Q
    |||||| ||||||| ||||  ||||||  |||||||||| |||||||||||||||| ||||| |||||||||| | ||||||||  |||| ||||||    
T  17389 ttgttcttgtgtaa-gcttataagctaatttcttgtaactcttttgtaacactttcatcataatggattggagggttgctctctttcccatattagg 17294  T

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