View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-49 (Length: 138)
Name: Solexa-NF5676-49
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-49 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 3566101 - 3565976
Alignment:
| Q |
13 |
gaggaacttactttcaactttcaacaaatcgaaattaagctttcaacaaaacccttggcatagttccaccataacaaatttgtagttccaacatcamtac |
112 |
Q |
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| T |
3566101 |
gaggaacttactttcaagtttcagcaaatcgaaattaagctttcaacaaaacccttggcatagttccaacataaactacttctagttccatcatcaatac |
3566002 |
T |
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| Q |
113 |
tagtttcatgcaccgtgattcttgtt |
138 |
Q |
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| T |
3566001 |
ttgttttatgcacagtgactcttgtt |
3565976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 3558089 - 3557972
Alignment:
| Q |
7 |
atagaagaggaacttactttcaactttcaacaaatcgaaattaagctttcaacaaaacccttggcatagttccaccataacaaatttgtagttccaacat |
106 |
Q |
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| T |
3558089 |
atagaagaggaacttactttcaagattcaaaaaatccaaattaagctttcaacaaaacccttggcaaagtcccaatataaataacttctatttccatcat |
3557990 |
T |
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| Q |
107 |
camtactagtttcatgca |
124 |
Q |
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| T |
3557989 |
caaaactagttttatgca |
3557972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 1686005 - 1686047
Alignment:
| Q |
29 |
actttcaacaaatcgaaattaagctttcaacaaaacccttggc |
71 |
Q |
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| T |
1686005 |
actttcaacaaatcgaaattaagctttcaacataacccttggc |
1686047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 39378789 - 39378855
Alignment:
| Q |
19 |
cttactttcaactttcaacaaatcgaaattaagctttcaacaaaacccttggcatagttccaccata |
85 |
Q |
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| T |
39378789 |
cttactttcaagtttcaagaaatcgaaattaagctttcaacaaaacccttggcaaagctccaccata |
39378855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 29859795 - 29859753
Alignment:
| Q |
29 |
actttcaacaaatcgaaattaagctttcaacaaaacccttggc |
71 |
Q |
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| T |
29859795 |
actttcaacaaatcgaaactaagctttcaacacaacccttggc |
29859753 |
T |
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