View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5676-50 (Length: 133)

Name: Solexa-NF5676-50
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5676-50
Solexa-NF5676-50
[»] chr2 (3 HSPs)
chr2 (24-100)||(43210525-43210601)
chr2 (24-100)||(43216555-43216631)
chr2 (24-92)||(41658834-41658902)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 5e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 43210525 - 43210601
Alignment:
Q  24 attatcataattgaaattatatatgtgacaccaatccaatgtcccaaccaacaaccttgtggttgcaccattggtat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43210525 attatcataattgaaattatatctgtgacaccaatccaatgtcccaaccaacaaccttgtggttgcagcactggtat 43210601  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 43216555 - 43216631
Alignment:
Q  24 attatcataattgaaattatatatgtgacaccaatccaatgtcccaaccaacaaccttgtggttgcaccattggtat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43216555 attatcataattgaaattatatctgtgacaccaatccaatgtcccaaccaacaaccttgtggttgcagcactggtat 43216631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 41658902 - 41658834
Alignment:
Q  24 attatcataattgaaattatatatgtgacaccaatccaatgtcccaaccaacaaccttgtggttgcacc 92  Q
    |||||||||||| ||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||    
T  41658902 attatcataattcaaattatatatctgataccaatccaatgtcacaacccacaaccttgtggttgcacc 41658834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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