View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-53 (Length: 130)
Name: Solexa-NF5676-53
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-53 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 12811871 - 12811748
Alignment:
| Q |
4 |
agagtggttgaagcacatggttagtgaagttggaagtccctacagtgtggcccattatgtaaacacacaaagctatcttacacagcaaaagcgcagtagt |
103 |
Q |
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| T |
12811871 |
agagtggttgaagcacatggttagtgaagttggaagtccctacagtgtggcccattatgtaaacacacaaagctatcttacacagcaaaagcgcagtagt |
12811772 |
T |
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| Q |
104 |
acaatatgatatcgtagtttcact |
127 |
Q |
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|||||||||||||||||||||||| |
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| T |
12811771 |
acaatatgatatcgtagtttcact |
12811748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 12748791 - 12748668
Alignment:
| Q |
4 |
agagtggttgaagcacatggttagtgaagttggaagtccctacagtgtggcccattatgtaaacacacaaagctatcttacacagcaaaagcgcagtagt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12748791 |
agagtggttgaagcacatggttagtgaagttggaagtccctacagtgtggcccattatttaaacacacaaagctatcttacacagcaaaagcgcagtagt |
12748692 |
T |
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| Q |
104 |
acaatatgatatcgtagtttcact |
127 |
Q |
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|||||||||||||||||||||||| |
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| T |
12748691 |
acaatatgatatcgtagtttcact |
12748668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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