View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-54 (Length: 144)
Name: Solexa-NF5676-54
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-54 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 49525185 - 49525305
Alignment:
| Q |
12 |
agagataagacatgacatgatgcca-taaggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatattttttaattttctt |
110 |
Q |
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| T |
49525185 |
agagataagacatgacatgatgccaataaggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatattttttaattttctt |
49525284 |
T |
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| Q |
111 |
caacatcaaagaaaagaagga |
131 |
Q |
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| T |
49525285 |
caacatcaaagaaaagaagga |
49525305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12470513 - 12470456
Alignment:
| Q |
40 |
ggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatatt |
97 |
Q |
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| T |
12470513 |
ggataacattttctttatcatattaaatgacaaaattacccttttaatcaattatatt |
12470456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 42369136 - 42369186
Alignment:
| Q |
53 |
tttatcatactaaccgacaaaattagccttttaatcaattatattttttaa |
103 |
Q |
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| T |
42369136 |
tttatcatattaattgacaaaattatccttataatcaattatattttttaa |
42369186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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