View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5676-56 (Length: 139)

Name: Solexa-NF5676-56
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5676-56
Solexa-NF5676-56
[»] chr4 (14 HSPs)
chr4 (32-139)||(3560934-3561041)
chr4 (45-139)||(3557713-3557807)
chr4 (45-132)||(3565738-3565825)
chr4 (32-123)||(1686261-1686352)
chr4 (54-126)||(53774840-53774912)
chr4 (39-126)||(11970965-11971052)
chr4 (55-126)||(11981682-11981753)
chr4 (39-126)||(53790553-53790640)
chr4 (32-118)||(53430075-53430161)
chr4 (45-103)||(19359160-19359218)
chr4 (61-126)||(35767018-35767083)
chr4 (56-135)||(6372436-6372515)
chr4 (54-132)||(837770-837848)
chr4 (54-120)||(8443452-8443518)
[»] chr1 (9 HSPs)
chr1 (42-132)||(39379047-39379137)
chr1 (32-139)||(21855359-21855466)
chr1 (56-134)||(4570919-4570997)
chr1 (39-139)||(4366478-4366578)
chr1 (44-139)||(17560761-17560856)
chr1 (46-120)||(4014955-4015029)
chr1 (57-138)||(10218973-10219054)
chr1 (56-126)||(50645485-50645555)
chr1 (54-133)||(31442969-31443048)
[»] chr3 (1 HSPs)
chr3 (32-139)||(3625721-3625828)
[»] chr7 (51 HSPs)
chr7 (26-139)||(29874498-29874611)
chr7 (63-139)||(29445663-29445739)
chr7 (39-125)||(660830-660916)
chr7 (39-120)||(14076684-14076765)
chr7 (39-120)||(14386712-14386793)
chr7 (39-139)||(29454086-29454186)
chr7 (44-139)||(29476328-29476423)
chr7 (26-136)||(29867226-29867336)
chr7 (57-124)||(19604464-19604531)
chr7 (44-139)||(29859441-29859536)
chr7 (32-139)||(29921969-29922076)
chr7 (57-127)||(29106813-29106883)
chr7 (57-139)||(29881243-29881325)
chr7 (58-127)||(29899373-29899442)
chr7 (58-126)||(19344577-19344645)
chr7 (32-136)||(29430977-29431081)
chr7 (54-139)||(36260240-36260325)
chr7 (60-127)||(19597659-19597726)
chr7 (56-137)||(1985955-1986036)
chr7 (44-109)||(6864795-6864860)
chr7 (79-132)||(9807818-9807871)
chr7 (55-132)||(13416910-13416987)
chr7 (57-126)||(18952906-18952975)
chr7 (57-126)||(18982953-18983022)
chr7 (57-126)||(18997599-18997668)
chr7 (45-126)||(19351058-19351139)
chr7 (54-126)||(22100493-22100565)
chr7 (58-137)||(22028617-22028696)
chr7 (56-126)||(18514787-18514857)
chr7 (56-118)||(19645630-19645692)
chr7 (74-132)||(36263047-36263105)
chr7 (44-117)||(19357919-19357992)
chr7 (58-103)||(19374779-19374824)
chr7 (54-126)||(22063642-22063714)
chr7 (54-126)||(22080868-22080940)
chr7 (45-97)||(24010412-24010464)
chr7 (57-121)||(46769376-46769440)
chr7 (56-127)||(19637217-19637288)
chr7 (44-119)||(24385208-24385283)
chr7 (67-138)||(29895457-29895528)
chr7 (56-94)||(20058057-20058095)
chr7 (56-118)||(20352103-20352165)
chr7 (65-131)||(20414877-20414943)
chr7 (76-126)||(22070111-22070161)
chr7 (45-126)||(12819905-12819986)
chr7 (63-120)||(22021398-22021455)
chr7 (45-90)||(24002235-24002280)
chr7 (72-137)||(26256764-26256829)
chr7 (54-121)||(20410672-20410739)
chr7 (72-136)||(22534615-22534679)
chr7 (47-127)||(35205915-35205995)
[»] chr5 (6 HSPs)
chr5 (32-139)||(24330875-24330982)
chr5 (39-126)||(18964813-18964900)
chr5 (58-137)||(29597554-29597633)
chr5 (58-126)||(29647676-29647744)
chr5 (58-120)||(29642365-29642427)
chr5 (75-120)||(23086788-23086833)
[»] chr6 (8 HSPs)
chr6 (44-115)||(17369675-17369746)
chr6 (56-132)||(6921350-6921426)
chr6 (39-126)||(20770650-20770737)
chr6 (56-115)||(6947880-6947939)
chr6 (58-132)||(6954521-6954595)
chr6 (56-120)||(6935218-6935282)
chr6 (60-132)||(6942971-6943043)
chr6 (60-103)||(14749420-14749463)
[»] chr2 (8 HSPs)
chr2 (56-137)||(14514889-14514970)
chr2 (45-133)||(18908798-18908886)
chr2 (45-133)||(18920754-18920842)
chr2 (56-123)||(554479-554546)
chr2 (45-131)||(18913546-18913632)
chr2 (55-135)||(25377065-25377145)
chr2 (74-126)||(10205462-10205514)
chr2 (66-126)||(21021279-21021339)
[»] scaffold0242 (2 HSPs)
scaffold0242 (44-139)||(13718-13813)
scaffold0242 (44-139)||(22553-22648)
[»] scaffold0867 (1 HSPs)
scaffold0867 (54-126)||(4667-4739)
[»] scaffold0649 (1 HSPs)
scaffold0649 (54-136)||(5428-5510)
[»] scaffold0064 (1 HSPs)
scaffold0064 (44-125)||(24206-24287)
[»] scaffold0354 (1 HSPs)
scaffold0354 (42-118)||(7471-7547)
[»] chr8 (2 HSPs)
chr8 (44-94)||(27618523-27618573)
chr8 (57-131)||(29157043-29157117)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 1e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 3560934 - 3561041
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  3560934 gtcataatctaattgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtt 3561033  T
Q  132 tccttgta 139  Q
    ||||||||    
T  3561034 tccttgta 3561041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 3557807 - 3557713
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgta 3557713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 3565825 - 3565738
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttt 3565738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 1686261 - 1686352
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataa 123  Q
    ||||| || |||||||||||| | |||||||  |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  1686261 gtcattttttaattgaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataa 1686352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 53774912 - 53774840
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||    
T  53774912 tgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaat 53774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 11970965 - 11971052
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||| ||||||||  |||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||||| |||||    
T  11970965 tctatttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaat 11971052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 11981682 - 11981753
Alignment:
Q  55 gataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||||||||| ||||||| |||||||| || |||||||| ||||| |||||||||| |||||    
T  11981682 gataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaat 11981753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 53790640 - 53790553
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||| ||||||||  ||| |||||||||||||||||||||||||||| | |||||  |||||||   |||||| ||||||||||||||    
T  53790640 tctacttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaat 53790553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 53430075 - 53430161
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatat 118  Q
    |||||| |||| ||||||||  || |||||||||||||| |||||||||||||| |||||  ||||| |||  ||||||||||||||    
T  53430075 gtcatagtctacttgaagatgttggtaactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatat 53430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 19359218 - 19359160
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattc 103  Q
    |||||||  ||||| |||||||||| || ||||||||||||||||||||| ||||||||    
T  19359218 tgaagattttgatacctaattttaataagttgagtccaagactcttcaactccaaattc 19359160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 35767083 - 35767018
Alignment:
Q  61 taattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||| | |||| |||||||||||||||| |||||||| | ||||| |||||||| |||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaat 35767018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 6372515 - 6372436
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttcct 135  Q
    |||||||||||||   |||||| || ||||||||| ||| ||| | || ||||| |||||||||||||||| ||||||||    
T  6372515 ataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggtttcct 6372436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 837848 - 837770
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||| ||||||||||  |||||| |||||||||||| ||| ||||| |  ||||| |||||||||| ||||| |||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggttt 837770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 8443452 - 8443518
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    ||||||||||||||||  |||||| |||||||||| | ||| ||||| || ||||||||||| ||||    
T  8443452 tgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataa 8443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 6e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 39379047 - 39379137
Alignment:
Q  42 aattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39379047 aattgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagttt 39379137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 21855359 - 21855466
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||| | ||||||  || ||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||    
T  21855359 gtcataatctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtt 21855458  T
Q  132 tccttgta 139  Q
    ||||||||    
T  21855459 tccttgta 21855466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 4570997 - 4570919
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttcc 134  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||  ||||| |||||||||| |||||| ||||||    
T  4570997 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttcc 4570919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 4366478 - 4366578
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgt 138  Q
    |||| ||||||||  || ||||||| |||||||||| |||||||||||||||||||||| ||||  ||||||||||||| || |||||| |||| |||||    
T  4366478 tctatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttgt 4366577  T
Q  139 a 139  Q
    |    
T  4366578 a 4366578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 17560761 - 17560856
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||||||||| |||||||||| |||| ||| | |||||||| ||||||||||||||||  ||||| ||||||||||  |||||| ||||||||||    
T  17560761 ttgaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaatcgatttccttgta 17560856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 4014955 - 4015029
Alignment:
Q  46 gaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    ||||||| || ||||||| |||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  4014955 gaagatcatggtaactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataa 4015029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 10219054 - 10218973
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgt 138  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||  ||||| ||||||| || |||||| ||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgt 10218973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 50645485 - 50645555
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||||  |||||| |||||||||||| ||| ||||| || ||||| ||||| |||| |||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaat 50645555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 31442969 - 31443048
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttc 133  Q
    ||||| ||||||||||| ||||||| ||| |||| |||| | |||||||   |||||| ||||||||  |||||||||||    
T  31442969 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacgaaatcggtttc 31443048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 3625828 - 3625721
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| || ||||    
T  3625828 gtcataatctaattgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggtt 3625729  T
Q  132 tccttgta 139  Q
     |||||||    
T  3625728 accttgta 3625721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 9e-25; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 29874611 - 29874498
Alignment:
Q  26 actatggtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaa 125  Q
    ||||| |||||| || | ||||||||  ||||||||||||||||| ||| |||||||||| ||||||||||||||||  ||||| ||||||||||| |||    
T  29874611 actatagtcataatcaatttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaa 29874512  T
Q  126 tcggtttccttgta 139  Q
    || |||||||||||    
T  29874511 tcagtttccttgta 29874498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 29445663 - 29445739
Alignment:
Q  63 attttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgta 29445739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 660830 - 660916
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaa 125  Q
    |||| ||||||||  ||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||| ||||    
T  660830 tctatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 14076765 - 14076684
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||    
T  14076765 tctatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 14076684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 14386793 - 14386712
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||    
T  14386793 tctatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 14386712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 29454086 - 29454186
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgt 138  Q
    |||| ||||||||| ||||||||||||||||  |||||||||||||| |||||||| |||||||   ||||| ||||||||| |||||||| ||||||||    
T  29454086 tctatttgaagatcttgataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgt 29454185  T
Q  139 a 139  Q
    |    
T  29454186 a 29454186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 29476328 - 29476423
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |  |||  ||| ||||| |||||||||||||||| ||||||||||||||||||    
T  29476328 ttgaagattttgataacttattttaagaaattgagtccaagagttgtcattccctaattccttcatctgccatataagaaaatcggtttccttgta 29476423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 29867336 - 29867226
Alignment:
Q  26 actatggtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaa 125  Q
    ||||| |||||| || | ||||||||  || ||||||||| |||| |||||||||||||| ||||||||||| ||||  ||||| |||||||||||||||    
T  29867336 actatagtcataatcaatttgaagattatggtaactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaa 29867237  T
Q  126 tcggtttcctt 136  Q
    || ||||||||    
T  29867236 tcagtttcctt 29867226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 19604464 - 19604531
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaa 124  Q
    |||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaa 19604531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 29859536 - 29859441
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    |||||||| |||||||||||||||||||||| | |||||||| |||||||| |||||||  ||||||| ||||||||  |||||  ||||||||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgta 29859441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 29921969 - 29922076
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||| | ||||||  |||||||||||| |||| ||||||| |||||| |||||| |||||||||  |||||||||||||||| |||||| |||    
T  29921969 gtcataatctattagaagattttgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtt 29922068  T
Q  132 tccttgta 139  Q
    || |||||    
T  29922069 tctttgta 29922076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 29106883 - 29106813
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatc 127  Q
    ||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||| || ||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatc 29106813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 29881325 - 29881243
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||  ||||| ||||| | ||||||||| |||||||||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttccttgta 29881243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 29899442 - 29899373
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatc 127  Q
    |||||||||| | |||||||||||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatc 29899373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 19344577 - 19344645
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||  ||||||||||||||| |||||    
T  19344577 aactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaat 19344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 29430977 - 29431081
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||| ||||||||| ||||||||||||||||| ||||| |||||||| |||| | |||||||||   ||||| ||||||||| ||||| |||     
T  29430977 gtcataatctatttgaagatcctgataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtg 29431076  T
Q  132 tcctt 136  Q
    |||||    
T  29431077 tcctt 29431081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 36260325 - 36260240
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||| |||||||||| || |||| |||||||||||||||| |||||||| | ||||| |||||||| |||||| |||| ||||||    
T  36260325 tgatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgta 36260240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 19597659 - 19597726
Alignment:
Q  60 ctaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatc 127  Q
    |||||||| ||||| |||||||| |||||||||||  ||||||| |||||||||||||| ||||||||    
T  19597659 ctaattttgagaaactgagtccatgactcttcaacttcaaattccttcatctgccatatgataaaatc 19597726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 1985955 - 1986036
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttg 137  Q
    ||||||||||||||  |||||||||||||| |||||||| |||||||| ||||| ||||| | || ||||| ||||| ||||    
T  1985955 ataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttg 1986036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 6864795 - 6864860
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcat 109  Q
    ||||||||  ||||||||| ||||||| || |||||||||||||||||||| |||||||| |||||    
T  6864795 ttgaagattatgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 6864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 9807871 - 9807818
Alignment:
Q  79 tccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    |||||||||||||||| |||||||| ||||||||||||||||  ||||||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttt 9807818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 13416910 - 13416987
Alignment:
Q  55 gataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    |||||||||||||||  |||| |  ||||||||||||||| |||||||| ||||| |||||||| ||||||| |||||    
T  13416910 gataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttt 13416987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 18952906 - 18952975
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| || |||||||| ||||  ||||| |||||||| |||||||||||||| |||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaat 18952975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 18982953 - 18983022
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| || |||||||| ||||  ||||| |||||||| |||||||||||||| |||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaat 18983022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 18997599 - 18997668
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| || |||||||| ||||  ||||| |||||||| |||||||||||||| |||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaat 18997668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 19351058 - 19351139
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||| ||| |||||||||| || ||| ||||||||||||| ||||| ||||||||  |||||||||||| || |||||    
T  19351058 tgaagatcctgaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaat 19351139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 22100565 - 22100493
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| |  || |||||||||||||||| ||| |||||||  ||||| ||||||||||||||||    
T  22100565 tgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaat 22100493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 22028696 - 22028617
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttg 137  Q
    ||||||| ||||| ||||||||||||||||||||||| ||| | ||  |||| | |||||||| ||||| ||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttg 22028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 18514787 - 18514857
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||||| |||||||||||||| | |||||| |||||||| | ||| | ||||||||| ||||    
T  18514787 ataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaat 18514857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 19645630 - 19645692
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatat 118  Q
    ||||||||||||||| ||  ||||||| ||||||||||  |||||||| ||||||||||||||    
T  19645630 ataactaattttaagtaacagagtccatgactcttcaattccaaattccttcatctgccatat 19645692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 36263105 - 36263047
Alignment:
Q  74 ttgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||||||||||||||||||| |||||||| | ||||| |||||||| |||||| ||||    
T  36263105 ttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36263047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 19357992 - 19357919
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccata 117  Q
    ||||||||| ||| |||||||||| |  ||||||||||||||||||| ||| ||||||||  |||||| |||||    
T  19357992 ttgaagatcctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccata 19357919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 19374824 - 19374779
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattc 103  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||    
T  19374824 aactaattttaagaaattgagtccaagaccgttcaactccaaattc 19374779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 22063714 - 22063642
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| |  || |||||||||||||||| ||  |||||||| ||||| |||||||||| |||||    
T  22063714 tgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaat 22063642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 22080940 - 22080868
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| |  ||  ||||||||||||||| ||| |||||||  ||||| ||||||||||||||||    
T  22080940 tgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaat 22080868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 24010464 - 24010412
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaacccc 97  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||| ||||||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactcttgaacccc 24010412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 46769440 - 46769376
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataat 121  Q
    |||||||||||||||| ||||||||||| ||||||||| || |||   ||||||||||| |||||    
T  46769440 taactaattttaagaagttgagtccaaggctcttcaactccgaatattttcatctgccacataat 46769376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 19637217 - 19637288
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatc 127  Q
    ||||||||||||||| |   || |||| ||||||| ||| |||||||| ||||| |||||||||||||||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaatc 19637288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 24385283 - 24385208
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatata 119  Q
    ||||||||  |||| |||||||||||||||| || ||||||||| |||||| ||||| |  ||||||| |||||||    
T  24385283 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 24385208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 29895528 - 29895457
Alignment:
Q  67 taagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgt 138  Q
    |||| |||||| ||||||||||||| | ||||||||  ||||||||||||| || ||| ||| |||||||||    
T  29895528 taagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgt 29895457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 20058057 - 20058095
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaac 94  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaac 20058095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 20352165 - 20352103
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatat 118  Q
    |||||||||||||| || ||||||||| || |||||||| |||||||| ||||| | ||||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatat 20352103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 20414943 - 20414877
Alignment:
Q  65 tttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| ||||||||||||||||  ||| | |||||||   |||||| |||||||||||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatcggtt 20414877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 22070161 - 22070111
Alignment:
Q  76 gagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||||| ||| |||||||  ||||| ||||||||||||||||    
T  22070161 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaat 22070111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 12819905 - 12819986
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||  ||| |||| |||||||| ||||||||||| || | |||||| ||||||||  |||||||||||| || |||||    
T  12819905 tgaagattctgacaactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 22021455 - 22021398
Alignment:
Q  63 attttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    |||||||| |||||||||||||| |||||||| ||| | ||  |||||||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataa 22021398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 24002280 - 24002235
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactctt 90  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||    
T  24002280 tgaagattctgataactaatcttaagtaattgagtccaagactctt 24002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 26256829 - 26256764
Alignment:
Q  72 aattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttg 137  Q
    ||||||||||||||||||| ||| ||| | || ||||||||||||| || ||||||  ||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttg 26256764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 20410739 - 20410672
Alignment:
Q  54 tgataactaattttaagaaattgagtccaag-actcttcaaccccaaattcattcatctgccatataat 121  Q
    |||||||||||||||||||||| |||||||| |||| ||||| ||||| || |||| |||||| |||||    
T  20410739 tgataactaattttaagaaattaagtccaagtactc-tcaactccaaaatctttcacctgccaaataat 20410672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 22534679 - 22534615
Alignment:
Q  72 aattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttcctt 136  Q
    ||||| |||||||||| |||| | |||||||| | ||| |||||||| |||||||||||| ||||    
T  22534679 aattgtgtccaagacttttcatctccaaattcctccatttgccatatgataaaatcggttccctt 22534615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 35205915 - 35205995
Alignment:
Q  47 aagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatc 127  Q
    ||||| |||||| |||| |||||| ||||||||||||||||  |||   ||||||||  |||||| |||||||| ||||||    
T  35205915 aagattgtgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatc 35205995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 24330875 - 24330982
Alignment:
Q  32 gtcatattctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||| |||| | ||||||  || ||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||    
T  24330875 gtcataatctattagaagattatggtaactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggtt 24330974  T
Q  132 tccttgta 139  Q
    ||||||||    
T  24330975 tccttgta 24330982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 18964813 - 18964900
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||| ||||||||  ||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||    
T  18964813 tctatttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaat 18964900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 29597554 - 29597633
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttg 137  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||||| |||| |||||||||| |||||  |||||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttg 29597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 29647744 - 29647676
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| |||||||||| |||||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaat 29647676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 29642427 - 29642365
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| ||||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataa 29642365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 23086833 - 23086788
Alignment:
Q  75 tgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    |||||||||||||||| ||| ||||| || ||||||||||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataa 23086788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 8e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 17369746 - 17369675
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgcca 115  Q
    ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||    
T  17369746 ttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 6921350 - 6921426
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| ||||| |||| ||||| |||||    
T  6921350 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgggttt 6921426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 20770737 - 20770650
Alignment:
Q  39 tctaattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||| ||||||||  ||||||||||||||||| |||||| |||| ||||||||||  |||||||| ||||| |||||||||| |||||    
T  20770737 tctatttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaat 20770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 6947880 - 6947939
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgcca 115  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| |||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgcca 6947939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 6954521 - 6954595
Alignment:
Q  58 aactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||||||||||  |||||||||||||| |||||||| |||||||| ||||| ||||| |||| ||||| |||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 6954595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 6935218 - 6935282
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataa 120  Q
    ||||||||||||||| |||| ||||||||| |||| ||| |||||||| ||||| ||||| ||||    
T  6935218 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataa 6935282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 6942971 - 6943043
Alignment:
Q  60 ctaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggttt 132  Q
    ||||||||||| ||||| ||| |||| |||||||| |||||||| ||||| ||| | |||| ||||| |||||    
T  6942971 ctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaataggttt 6943043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 14749463 - 14749420
Alignment:
Q  60 ctaattttaagaaattgagtccaagactcttcaaccccaaattc 103  Q
    |||||||| || ||||||||||||||||||| ||| ||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattc 14749420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 14514970 - 14514889
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttg 137  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||| ||| | |||||||| || || ||||| ||||    
T  14514970 ataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttg 14514889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 18908798 - 18908886
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttc 133  Q
    |||||||  ||| |||||||||| || ||||||||||||||||||| ||| ||||||||  |||||| |||||||| ||||| ||||||    
T  18908798 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18908886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 18920754 - 18920842
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttc 133  Q
    |||||||  ||| |||||||||| || ||||||||||||||||||| ||| ||||||||  |||||| |||||||| ||||| ||||||    
T  18920754 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18920842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 554546 - 554479
Alignment:
Q  56 ataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataa 123  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||| ||||  |||| |||||||||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataa 554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 18913546 - 18913632
Alignment:
Q  45 tgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||||  ||| |||||||||| || ||||||||||||||||||| ||| ||||||||  |||||| |||||||| ||||| ||||    
T  18913546 tgaagattttgaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 25377145 - 25377065
Alignment:
Q  55 gataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttcct 135  Q
    |||||||||||||||  |||||| |||||||||||| ||| ||||| || ||||||  |||||||| ||||| | ||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcct 25377065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 10205462 - 10205514
Alignment:
Q  74 ttgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||||||||||||||||||| ||| | ||| |||||| |||||||| |||||    
T  10205462 ttgagtccaagactcttcaacaccatactcagtcatcttccatataacaaaat 10205514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 21021279 - 21021339
Alignment:
Q  66 ttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    ||||| |||| |||||| |||| |||||| | |||||| ||||||||||||||| ||||||    
T  21021279 ttaagcaatttagtccatgacttttcaactctaaattccttcatctgccatatagtaaaat 21021339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 13718 - 13813
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||||||  ||||| || ||||||||||| ||||||||||| || |||   || ||||| |||||||||||||||| |||||||||||| |||||    
T  13718 ttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggtttctttgta 13813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 22553 - 22648
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttccttgta 139  Q
    ||||||||  ||||| || ||||||||||| ||||||||||| || |||   || ||||| |||||||||||||||| |||||||||||| |||||    
T  22553 ttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggtttctttgta 22648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 4667 - 4739
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaat 126  Q
    |||||||||||||| |  || |||||||||||||||| ||| |||||||  ||||| ||||||||||||||||    
T  4667 tgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaat 4739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 5510 - 5428
Alignment:
Q  54 tgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtttcctt 136  Q
    |||||||||| |||||| ||   |||||||||||||||||| | |||||  |||||||||||||||| ||||||  |||||||    
T  5510 tgataactaaatttaaggaacatagtccaagactcttcaactctaaattttttcatctgccatataacaaaatcattttcctt 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 24287 - 24206
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaa 125  Q
    ||||||||||||||| |||| |||||| |||||||| ||||||| |||| | ||| ||||  |||||| |||||||| ||||    
T  24287 ttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaa 24206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 7547 - 7471
Alignment:
Q  42 aattgaagatcgtgataactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatat 118  Q
    ||||||||||   |||| ||||||||||| ||||||  ||||||||| ||||| |||||||| ||||| ||||||||    
T  7547 aattgaagattccgatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccatat 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 27618573 - 27618523
Alignment:
Q  44 ttgaagatcgtgataactaattttaagaaattgagtccaagactcttcaac 94  Q
    ||||||||  |||||||||| |||||| || ||||||||||||||||||||    
T  27618573 ttgaagattctgataactaactttaagcaactgagtccaagactcttcaac 27618523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 29157117 - 29157043
Alignment:
Q  57 taactaattttaagaaattgagtccaagactcttcaaccccaaattcattcatctgccatataataaaatcggtt 131  Q
    |||||||||||||| | ||||||||| | ||||||||| ||||||   | ||||||||||||||| || ||||||    
T  29157117 taactaattttaaggagttgagtccatggctcttcaactccaaatgtttccatctgccatataatgaattcggtt 29157043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University