View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-58 (Length: 136)
Name: Solexa-NF5676-58
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-58 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 2239353 - 2239482
Alignment:
| Q |
11 |
ggttgaatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagagaaa----agagagatgtttttaggtcagaga |
106 |
Q |
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| T |
2239353 |
ggttgaatctacatcacgacggatataggttggattgaaaggcaaaaggatgacggtggagatctagagagaggtcagagagatgtttttaggtcagaga |
2239452 |
T |
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| Q |
107 |
ttttacttagttataaagtagaatgtatat |
136 |
Q |
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| T |
2239453 |
ttttacttagttacaaaatagaatgtatat |
2239482 |
T |
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Target: chr5 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40681757 - 40681824
Alignment:
| Q |
13 |
ttgaatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
40681757 |
ttgaatctacatcgcggcggatataggttggattggaaggaaggagggtgacggtggagatctagaga |
40681824 |
T |
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Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 6706365 - 6706432
Alignment:
| Q |
13 |
ttgaatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
6706365 |
ttgaatctacatcgcggcggatataggttagattggaaggaaggagggtgacggtggagatctagaga |
6706432 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 40900774 - 40900841
Alignment:
| Q |
13 |
ttgaatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
40900774 |
ttgaatctacatcgtggcgaatataggttggattggaagggaggagggtgatagtggagatctagaga |
40900841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 15496757 - 15496824
Alignment:
| Q |
13 |
ttgaatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
15496757 |
ttgaatctacatcgcggcggatataggctggattggaaggaaggagggtgacggtggagatctagaga |
15496824 |
T |
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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 23786 - 23845
Alignment:
| Q |
16 |
aatctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatct |
75 |
Q |
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| T |
23786 |
aatctatatcacgacggatataggttggattggaaggaaggagggtgccggtgaagatct |
23845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 22335104 - 22335041
Alignment:
| Q |
17 |
atctacatcacgacggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
22335104 |
atctacatcacggaggatataggttggattgggagggaggagggcgacggtggagatctagaga |
22335041 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 21590150 - 21590082
Alignment:
| Q |
13 |
ttgaatctacatcacga-cggatataggttggattggaaggcaagagggtgacggcggagatctagaga |
80 |
Q |
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| T |
21590150 |
ttgaatctacatcagcagcggatataggttggattggaagggaggagggtgacaatggagatctagaga |
21590082 |
T |
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