View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-61 (Length: 158)
Name: Solexa-NF5676-61
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-61 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 4269628 - 4269722
Alignment:
| Q |
8 |
gattcttgccaatatagtagaccctcttgttccctctcctcaaatttcaccaattcttacatcaatcgctgtatctgctccctctccaggaacat |
102 |
Q |
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| T |
4269628 |
gattcttgcctctatagtagaccctcttgttccctctcctcaaatttcaccaattcttacatcaatcgctgtatctgcttcctctccaggcacat |
4269722 |
T |
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Target: chr1 (Bit Score: 75; Significance: 7e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 2806034 - 2806128
Alignment:
| Q |
8 |
gattcttgccaatatagtagaccctcttgttccctctcctcaaatttcaccaattcttacatcaatcgctgtatctgctccctctccaggaacat |
102 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
2806034 |
gattcttgcctctatagtacaccctcttgttccctctcctcaaatttcaccaattcttacatcaatcgctgtatctgcttcctctccaggcacat |
2806128 |
T |
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