View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5676-9 (Length: 120)
Name: Solexa-NF5676-9
Description: NF5676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5676-9 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 21358534 - 21358598
Alignment:
| Q |
50 |
tcggaatcattaacattctgaacaagagcttgcttcccttcatcttgagacccgacccaaccctc |
114 |
Q |
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| T |
21358534 |
tcggaatcattaacattctgaacaagagcttgcttcccttcatcttgagacccaacccaaccctc |
21358598 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 20022988 - 20022946
Alignment:
| Q |
8 |
agacgaccactacatcccccttttgccgatgcttcatctcact |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20022988 |
agacgaccactacatcccccttttgccgatgctttatctcact |
20022946 |
T |
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