View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-10 (Length: 71)
Name: Solexa-NF5680-10
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-10 |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 40994313 - 40994259
Alignment:
| Q |
10 |
gagatgaatcggagcggatgcaaagtgctttgaatgtaaaacatttgattctaaa |
64 |
Q |
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| T |
40994313 |
gagatgaatcggagcggatgcaaagtgctttgaatgtaaaacatttgattctaaa |
40994259 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 21180642 - 21180680
Alignment:
| Q |
26 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaa |
64 |
Q |
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| T |
21180642 |
gatgcaaagtgctttgaatgtaaaacatttgactctaaa |
21180680 |
T |
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