View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-16 (Length: 309)
Name: Solexa-NF5680-16
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 29838165 - 29837864
Alignment:
| Q |
8 |
cctacaccataaagataagtaataataatcagtactttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgt |
107 |
Q |
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| T |
29838165 |
cctacaccataaagataagtaataataatcagtattttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggtgcgcatggtgt |
29838066 |
T |
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| Q |
108 |
gtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaag |
207 |
Q |
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| T |
29838065 |
gtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaag |
29837966 |
T |
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| Q |
208 |
aagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatgcatcaataaattacaacacaacttatatatcatagaataattttacctt |
307 |
Q |
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| T |
29837965 |
aagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatgcatcaataaattacaacacaacttatatatcatagaataattttacctt |
29837866 |
T |
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| Q |
308 |
tg |
309 |
Q |
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| T |
29837865 |
tg |
29837864 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
| Q |
153 |
taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc |
244 |
Q |
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| T |
34628535 |
taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc |
34628626 |
T |
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