View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-17 (Length: 208)
Name: Solexa-NF5680-17
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-17 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 4505758 - 4505949
Alignment:
| Q |
8 |
ctaatggtattttttatcagaaattttggaacttaaagaaggaagtatatacacggctttaggtatcctcaatggtaatgatgaggtcggactcataatt |
107 |
Q |
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| T |
4505758 |
ctaatggtattttttatcagaaattttggaacttaaagaaggaagtatatacacggctttaggtatcctcaatggtaatgatgaggtcggactcataatt |
4505857 |
T |
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| Q |
108 |
ttgcaataagaagtaaataatttattttacatgataactcaaaagagcctctaaaacaaataactcaaaagaaaacattaatcaacctttga |
199 |
Q |
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| T |
4505858 |
ttgcaataagaagtaaataatttattttacataataactcaaaagagcctctaaaacaaataactcaaaagaaaacattaatcaacctttga |
4505949 |
T |
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