View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-18 (Length: 206)
Name: Solexa-NF5680-18
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-18 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 39543859 - 39544040
Alignment:
| Q |
7 |
aaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggatcaaagacttgttatcattgggccgagctatctcggcccatga |
106 |
Q |
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| T |
39543859 |
aaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggatcaaagacttgttattgttgggtcgagctatctcggcccatga |
39543958 |
T |
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| Q |
107 |
tacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatc |
188 |
Q |
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| T |
39543959 |
tacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatc |
39544040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 39553878 - 39554059
Alignment:
| Q |
7 |
aaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggatcaaagacttgttatcattgggccgagctatctcggcccatga |
106 |
Q |
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| T |
39553878 |
aaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatcaaagacttgttatcattgggccgagctatctcggcccatga |
39553977 |
T |
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| Q |
107 |
tacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatc |
188 |
Q |
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| T |
39553978 |
tacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagccactactaaaccaccacatttcatc |
39554059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 39586988 - 39587169
Alignment:
| Q |
7 |
aaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggatcaaagacttgttatcattgggccgagctatctcggcccatga |
106 |
Q |
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| T |
39586988 |
aaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatcaaagacttgttattgctcgatcgggctatctcggcccatga |
39587087 |
T |
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| Q |
107 |
tacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccacatttcatc |
188 |
Q |
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| T |
39587088 |
tacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccactactaacccaccacatttcatc |
39587169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 17503782 - 17503870
Alignment:
| Q |
93 |
atctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccaca |
181 |
Q |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
88 |
gagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactac |
169 |
Q |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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