View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-19 (Length: 185)
Name: Solexa-NF5680-19
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-19 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 45318503 - 45318671
Alignment:
| Q |
8 |
tgatgtgcataatattaattagatagtataataagaagaannnnnnnnngttaatgatctattcaaaactgaaaagtgacattcatttttagnnnnnnnn |
107 |
Q |
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| T |
45318503 |
tgatgtgcataatattaattagatagtataatcagaagaatttttttttgttaatgatctattcaaaactgaaaagtggcattcatttttagaaaaaaaa |
45318602 |
T |
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| Q |
108 |
n-taagattttcatgacattcattttaggacaaattaagactttaatttacagttattatggttctgtg |
175 |
Q |
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| T |
45318603 |
aataagattttcatgacattcattttaggacaaattaagactttaatttacagttattatggttctgtg |
45318671 |
T |
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