View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-20 (Length: 193)
Name: Solexa-NF5680-20
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-20 |
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| [»] chr8 (7 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 4506323 - 4506147
Alignment:
| Q |
17 |
gatagaaaacataatagatttatgtgggtcgagagagatgaaggaattggaggtaaataaatctggatctgttggactgaactttgagaacaagttcttc |
116 |
Q |
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| T |
4506323 |
gatagaaaacataatagatttatgtggctttgaaaagatgaaggaattggaggtaaataaatctggatctgttggactaaactttgagaacaagttcttc |
4506224 |
T |
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| Q |
117 |
tttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatcataga |
193 |
Q |
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| T |
4506223 |
tttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcataga |
4506147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 15077115 - 15077249
Alignment:
| Q |
53 |
gatgaaggaattggaggtaaataaatctggatctgtt-ggactgaactttgagaacaagttcttctttagaaaggcagaagtaggagattggataaatta |
151 |
Q |
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| T |
15077115 |
gatgaaggaattggaggtaaataaatttggatctgttcggtcaga-cattgagaacaaattcttctttcgaaaggccaaagtagaagattggaaaaatta |
15077213 |
T |
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| Q |
152 |
tctttctccttcaatggaagaaaaactatccaaaat |
187 |
Q |
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| T |
15077214 |
cctttccccttcaatggaagaaaaactgtccaaaat |
15077249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 15165028 - 15164894
Alignment:
| Q |
53 |
gatgaaggaattggaggtaaataaatctggatctgttggactga-actttgagaacaagttcttctttagaaaggcagaagtaggagattggataaatta |
151 |
Q |
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| T |
15165028 |
gatgaaggaattggaggtaaataaatctggat-tcatgcggtcatatgttgggaacaaattcttctttcgaaaggccaaagtaggagattggaaaaatta |
15164930 |
T |
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| Q |
152 |
tctttctccttcaatggaagaaaaactatccaaaat |
187 |
Q |
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| T |
15164929 |
cctttccccttcaatggaagaaaaactatccaaaat |
15164894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 15751590 - 15751728
Alignment:
| Q |
52 |
agatgaaggaattggaggtaaataaatctggatctgttggactgaactttgagaacaagttcttctttagaaaggcagaagtaggagattggataaatta |
151 |
Q |
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| T |
15751590 |
agatgaaggaattggaggcaaataaatttggagagtttggaaggaaaattgaaaaaaactacttgttccgaaaggctgaggtaggagattggattaacta |
15751689 |
T |
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| Q |
152 |
tctttctccttcaatggaagaaaaactatccaaaatcat |
190 |
Q |
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| T |
15751690 |
cctttctccttcaatggtagaaaaactatccaaaatcat |
15751728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 15000653 - 15000727
Alignment:
| Q |
115 |
tctttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatca |
189 |
Q |
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| T |
15000653 |
tctttcgaaaggccgaaataggagattggaaaaattatctttcccgttcaatggtagaaaaaatatccaaaatca |
15000727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 13033891 - 13033983
Alignment:
| Q |
101 |
tgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatcataga |
193 |
Q |
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| T |
13033891 |
tgagaaaaagtttttctttcgaaagggagaaataggagattgggtaaattacttttctccttcaatgatagaaagattatccaaagtcataga |
13033983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 15053025 - 15053106
Alignment:
| Q |
109 |
agttcttctttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatcat |
190 |
Q |
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| T |
15053025 |
agtttttctttcgaaagggagaaataggggattgggtaaattacttttctccttcaatgatagaaagattatccaaaatcat |
15053106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 1617864 - 1617771
Alignment:
| Q |
100 |
ttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatcataga |
193 |
Q |
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| T |
1617864 |
ttgagaaaaagtactactttcgaaaggcagaaataggggattggattaattatctttctccttcaatggtagagaagctgtccaaaatcataga |
1617771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 1626406 - 1626321
Alignment:
| Q |
108 |
aagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttcaatggaagaaaaactatccaaaatcataga |
193 |
Q |
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| T |
1626406 |
aagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggtagataagttatccaaaatcataga |
1626321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 3652576 - 3652503
Alignment:
| Q |
95 |
gaactttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttcaatgg |
168 |
Q |
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| T |
3652576 |
gaactttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatgg |
3652503 |
T |
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