View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-22 (Length: 151)
Name: Solexa-NF5680-22
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-22 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 18100934 - 18100791
Alignment:
| Q |
8 |
ttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatattatgcttccgtggaatcaggcttca |
107 |
Q |
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| T |
18100934 |
ttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttca |
18100835 |
T |
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| Q |
108 |
tcaaataagctcgttaaattgtccaaacgcttttaatgtctctg |
151 |
Q |
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| T |
18100834 |
tcaaataagctcgttaaattgtccaaacgcttttaatgtttctg |
18100791 |
T |
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Target: chr2 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 37858542 - 37858399
Alignment:
| Q |
8 |
ttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatattatgcttccgtggaatcaggcttca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37858542 |
ttaactcccttcaagactcgcttcgcgaccggaacattataataccgacaccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttca |
37858443 |
T |
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| Q |
108 |
tcaaataagctcgttaaattgtccaaacgcttttaatgtctctg |
151 |
Q |
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| T |
37858442 |
tcaaataagctcgttaaattgtccaaacgcttttaatgtttctg |
37858399 |
T |
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