View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-24 (Length: 143)
Name: Solexa-NF5680-24
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-24 |
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| [»] scaffold0651 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 131; Significance: 2e-68; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 1391 - 1529
Alignment:
| Q |
5 |
taggaaaattatgttgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
104 |
Q |
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| T |
1391 |
taggaaaattatgtcgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
1490 |
T |
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| Q |
105 |
ggcttctagcaacaagattgggcactttgttgatttgtg |
143 |
Q |
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| T |
1491 |
ggcttctagcaacaaggttgggcactttgttgatttgtg |
1529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 4409 - 4296
Alignment:
| Q |
30 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaagattgggcac |
129 |
Q |
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| T |
4409 |
aatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
4310 |
T |
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| Q |
130 |
tttgttgatttgtg |
143 |
Q |
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| T |
4309 |
tttattgatttgtg |
4296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 31331477 - 31331615
Alignment:
| Q |
5 |
taggaaaattatgttgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
104 |
Q |
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| T |
31331477 |
taggaaaattatgtcgtaaattttgaatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgt |
31331576 |
T |
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| Q |
105 |
ggcttctagcaacaagattgggcactttgttgatttgtg |
143 |
Q |
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| T |
31331577 |
ggcttctagcaacaaggttgggcactttgttgatttgtg |
31331615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 31319261 - 31319374
Alignment:
| Q |
30 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaagattgggcac |
129 |
Q |
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| T |
31319261 |
aatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
31319360 |
T |
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| Q |
130 |
tttgttgatttgtg |
143 |
Q |
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| T |
31319361 |
tttattgatttgtg |
31319374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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