View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-28 (Length: 141)
Name: Solexa-NF5680-28
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-28 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 9e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 4179354 - 4179492
Alignment:
| Q |
1 |
cataggtttgtttattgataaggtatatctatatataggtcagcataattttgagtga-gggaagggagggtttgacattgcttgcaagaaacacaaaca |
99 |
Q |
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| T |
4179354 |
cataggtttgtttgttgataaggtatatctatatataggtcagcataattttgagtgaagggaagggagggtttgacattgcttgcaagaaacacaaaca |
4179453 |
T |
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| Q |
100 |
taaagcttgataaaacagcttataatatattcattaaat |
138 |
Q |
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| T |
4179454 |
taaagcttgataaaacagctttcaatatattccttaaat |
4179492 |
T |
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