View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-3 (Length: 122)
Name: Solexa-NF5680-3
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-3 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 4e-51; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 25379093 - 25379206
Alignment:
| Q |
8 |
ctccgcaatatataatatttgcttttcattttaataatatttgttagagtgttgcaaatgaaatgtgatagttttaggttgccaacatagttaaaatggc |
107 |
Q |
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| T |
25379093 |
ctcctcaatatataatatttgctttttattttaataatatttgttagagtgttgcaaatgaaatgtgatagttttaggttgccaacatagttaaaatggc |
25379192 |
T |
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| Q |
108 |
tttattgttatgtc |
121 |
Q |
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| T |
25379193 |
tttattgtcatgtc |
25379206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 25407163 - 25407276
Alignment:
| Q |
8 |
ctccgcaatatataatatttgcttttcattttaataatatttgttagagtgttgcaaatgaaatgtgatagttttaggttgccaacatagttaaaatggc |
107 |
Q |
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| T |
25407163 |
ctcctcaatatataatatttgttttttattttaataatatttgttagagtgttgcaaatgaaatgtagaagttttaggttgccaacatagttaaaattgc |
25407262 |
T |
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| Q |
108 |
tttattgttatgtc |
121 |
Q |
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| T |
25407263 |
tttattgtcatgtc |
25407276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 25329853 - 25329951
Alignment:
| Q |
23 |
tatttgcttttcattttaataatatttgttagagtgttgcaaatgaaatgtgatagttttaggttgccaacatagttaaaatggctttattgttatgtc |
121 |
Q |
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| T |
25329853 |
tatttgttttttatttttataatatttattagagtgttgcaaatgaaaggtagtagttttaggatgtcaacatagttaaaatatctttattgtcatgtc |
25329951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 24892322 - 24892227
Alignment:
| Q |
26 |
ttgcttttcattttaataatatttgttagagtgttgcaaatgaaatgtgatagttttaggttgccaacatagttaaaatggctttattgttatgtc |
121 |
Q |
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| T |
24892322 |
ttgcttttcatttttataatattcatcatagtgttgcaaatgaaaggtagtagttttaggatgtcaacatagttaaaatgtctttattgtcatgtc |
24892227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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