View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5680-31 (Length: 127)

Name: Solexa-NF5680-31
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5680-31
Solexa-NF5680-31
[»] chr8 (2 HSPs)
chr8 (8-127)||(31910298-31910417)
chr8 (40-122)||(31902967-31903049)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 31910417 - 31910298
Alignment:
Q  8 taaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccactttagcaggtcccataattctatgcta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  31910417 taaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcagctcccacaattctatgcta 31910318  T
Q  108 gcaaacatcatagataagtt 127  Q
    ||||||||||||||||||||    
T  31910317 gcaaacatcatagataagtt 31910298  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 31903049 - 31902967
Alignment:
Q  40 gattgaatgaaaaatgtgatctgttgcggaccacggtccactttagcaggtcccataattctatgctagcaaacatcatagat 122  Q
    ||||||||||| |||| ||||||||| |||||| |||||| |||||  | |||||  ||||||||||||||||||||||||||    
T  31903049 gattgaatgaataatgcgatctgttgtggaccatggtccattttagtcgttcccaggattctatgctagcaaacatcatagat 31902967  T

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