View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-38 (Length: 143)
Name: Solexa-NF5680-38
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-38 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 353158 - 353299
Alignment:
| Q |
2 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
101 |
Q |
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| T |
353158 |
gcaaaggcagagaaatttgatgaagctttacaagttgtcgaaagaatgaatgctgttgggtgtagacctgatacactttttttcaattcgttcatttata |
353257 |
T |
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| Q |
102 |
cgatggggagagcaggcagaatagatgatgctacacatatat |
143 |
Q |
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| T |
353258 |
cgatggggagagcaggcagaatagatgatgctacacatatat |
353299 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 10579938 - 10580072
Alignment:
| Q |
2 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
101 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||| |
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| T |
10579938 |
gcaaaagcagagaaatttgacgaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacgctctttttcaattcgttcatttata |
10580037 |
T |
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| Q |
102 |
cgatggggagagcaggcagaatagatgatgctaca |
136 |
Q |
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| T |
10580038 |
cgttggggagagcaggcagaatagatgatgctaca |
10580072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 24578345 - 24578482
Alignment:
| Q |
2 |
gcaaaggcagagaaatttgacgaagctttacaaattgtcgaaagaatgaatgctgttgggtgtagacctgatacacnnnnnnncaattcgttcatttata |
101 |
Q |
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| T |
24578345 |
gcaaaagcagaaaaatttgaagaagctttacaagttgtcgaaagaatgaatgctgttggatgtaggcctgatacactctttttcaattcgctcatttata |
24578444 |
T |
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| Q |
102 |
cgatggggagagcaggcagaatagatgatgctacacat |
139 |
Q |
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| T |
24578445 |
cattggggagagcaggcagaatagatgatgctacacat |
24578482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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