View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-40 (Length: 143)
Name: Solexa-NF5680-40
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 2e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 13738579 - 13738721
Alignment:
| Q |
4 |
agagaacatgtgactttgaaaaatcta---tactcttaaacatcttatataataacttgtattttaattgatttcaaataaaggaagaatgttaatagct |
100 |
Q |
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| T |
13738579 |
agagaacatgtgactttgaaaaatctactatactcttaaacatcttatataataacttgtattttaattgatttcaaataaaggaagaatgctaatagct |
13738678 |
T |
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| Q |
101 |
caatttataacctataaagcatttataggaacacaagacacaa |
143 |
Q |
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| T |
13738679 |
caatttataacctataaagtatttataggaacacaagacacaa |
13738721 |
T |
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