View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-44 (Length: 130)
Name: Solexa-NF5680-44
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-44 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 5054035 - 5054152
Alignment:
| Q |
8 |
aaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgtgtttgatgtctcttccaagtagagatact |
107 |
Q |
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| T |
5054035 |
aaaattgcccatggtaatgccctcgatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgtgtttgatgtctcttccaagtagagatact |
5054134 |
T |
|
| Q |
108 |
ttaaagatgatttgatcg |
125 |
Q |
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| T |
5054135 |
ttaaagatgatttgatcg |
5054152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 46446222 - 46446193
Alignment:
| Q |
45 |
tgtttggtcttgacattgtaaccaaaatgt |
74 |
Q |
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| T |
46446222 |
tgtttggtcttgacattgtaaccaaaatgt |
46446193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 7e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 39576614 - 39576559
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt |
78 |
Q |
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| T |
39576614 |
aatgccctcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgt |
39576559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 3561339 - 3561389
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg |
73 |
Q |
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| T |
3561339 |
aatgccctctatctttgtcaatcgtctagtcttgacattgtaaccaaaatg |
3561389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 225608 - 225560
Alignment:
| Q |
25 |
tgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg |
73 |
Q |
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|||||||||||||||||| ||| | |||||||||||||||| |||||| |
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| T |
225608 |
tgccctcaatctttgtcagttgtctagtcttgacattgtaactaaaatg |
225560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 39572614 - 39572559
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt |
78 |
Q |
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|||| ||||||||||||| || |||||||| |||| ||||||| ||||||||||| |
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| T |
39572614 |
aatgtcctcaatctttgtaaattgtttggttttgatattgtaattaaaatgtatgt |
39572559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 9842243 - 9842188
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt |
78 |
Q |
| |
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|||| |||||||||||||||| || ||||||| |||||||||||||||||||||| |
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|
| T |
9842243 |
aatgtcctcaatctttgtcaattgcctggtcttcacattgtaaccaaaatgtatgt |
9842188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 9903172 - 9903122
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg |
73 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||| |||||||||| |||||| |
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| T |
9903172 |
aatgtcctcaatctttatcaattgtttggtcttcacattgtaacaaaaatg |
9903122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 9860884 - 9860829
Alignment:
| Q |
23 |
aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt |
78 |
Q |
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||||||||| ||| ||||||| ||| | || |||||||||||||||||||| |||| |
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| T |
9860884 |
aatgccctcgatcattgtcaattgtctagttttgacattgtaaccaaaatgaatgt |
9860829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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