View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-5 (Length: 135)
Name: Solexa-NF5680-5
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-5 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 105; Significance: 8e-53; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 1725 - 1613
Alignment:
| Q |
10 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1725 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaatttat |
1626 |
T |
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| Q |
110 |
gcttgagacccct |
122 |
Q |
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||||||||||||| |
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| T |
1625 |
gcttgagacccct |
1613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 4098 - 4212
Alignment:
| Q |
8 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaattt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| | |
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| T |
4098 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacct |
4197 |
T |
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| Q |
108 |
atgcttgagacccct |
122 |
Q |
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| T |
4198 |
aagcttgagagccct |
4212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 8e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 31331811 - 31331699
Alignment:
| Q |
10 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31331811 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaatttat |
31331712 |
T |
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| Q |
110 |
gcttgagacccct |
122 |
Q |
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| T |
31331711 |
gcttgagacccct |
31331699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 31319572 - 31319458
Alignment:
| Q |
8 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaattt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| | |
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| T |
31319572 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacct |
31319473 |
T |
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| Q |
108 |
atgcttgagacccct |
122 |
Q |
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| T |
31319472 |
aagcttgagagccct |
31319458 |
T |
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