View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5680-6 (Length: 141)
Name: Solexa-NF5680-6
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5680-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 353627 - 353494
Alignment:
| Q |
8 |
agattgaatgcccacttgcatctatctgctctgcagagcccatgaattagcaatgtataggttgaaaggtcaagaccaatatgatatttatttaccatgt |
107 |
Q |
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| T |
353627 |
agattgaatgcccacttgcatctatctgctctgcagagcccatgaattagcaatgtataggttgaaaggtcaagaccaatatgatatttatttaccatgt |
353528 |
T |
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| Q |
108 |
cacttaatatatcattcaaccaagtatctacttt |
141 |
Q |
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| T |
353527 |
cacttaatatatcattcaaccaagtatctacttt |
353494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 10580404 - 10580275
Alignment:
| Q |
8 |
agattgaatgcccacttgcatctatctgctctgcagagcccatgaattagcaatgtataggttgaaaggtcaagaccaatatgatatttatttaccatgt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
10580404 |
agatcgaatgcccacttgcatctatctgctctgcaaagcccatgaattagcaatgaataggttgaaaggtcaagaccaatctgatatttatttaccatat |
10580305 |
T |
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| Q |
108 |
cacttaatatatcattcaaccaagtatcta |
137 |
Q |
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| T |
10580304 |
catttaatatatcattcaaccaagtatcta |
10580275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 24578811 - 24578682
Alignment:
| Q |
8 |
agattgaatgcccacttgcatctatctgctctgcagagcccatgaattagcaatgtataggttgaaaggtcaagaccaatatgatatttatttaccatgt |
107 |
Q |
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|||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24578811 |
agatcgaatgcccacttgcatctatctgctctgtaaagcccatgaattagcaatgtataggttgaaaggtcaagaccaatatgatatttatttaccatgt |
24578712 |
T |
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| Q |
108 |
cacttaatatatcattcaaccaagtatcta |
137 |
Q |
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| T |
24578711 |
catttaatatatcattcaaccaagtatcta |
24578682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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