View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-1 (Length: 383)
Name: Solexa-NF5682-1
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-1 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 5273078 - 5273424
Alignment:
| Q |
8 |
tctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacgaaacctttcaccaatgagc |
107 |
Q |
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| T |
5273078 |
tctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaactaaacgaaacctttcaccaatgagc |
5273177 |
T |
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| Q |
108 |
atcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaaatatcaatcaagtagtaatctcaagtgtcctaa |
207 |
Q |
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| T |
5273178 |
atcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtac-------tatcaatcaagtagtaatctcaagtgtcctaa |
5273270 |
T |
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| Q |
208 |
acactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacagctactaattctca |
307 |
Q |
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| T |
5273271 |
acactaatcaacattcaaaactcttt-aaacaattacttactacaatgatgaaactacgatctcttttctttgcctcaattctacagctactaattctca |
5273369 |
T |
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| Q |
308 |
ccctytgctactccactaccacctcagcacaaatctcaccagttcaatttccaca |
362 |
Q |
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| T |
5273370 |
ccctctactattccactaccacctcagcacaaatctcaccagttcaatctccaca |
5273424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
| Q |
70 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
169 |
Q |
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||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | ||||||| |
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| T |
5268732 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact |
5268831 |
T |
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| Q |
170 |
at |
171 |
Q |
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| T |
5268832 |
at |
5268833 |
T |
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