View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5682-10 (Length: 154)

Name: Solexa-NF5682-10
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5682-10
Solexa-NF5682-10
[»] chr4 (5 HSPs)
chr4 (8-103)||(3250879-3250974)
chr4 (48-87)||(3271484-3271523)
chr4 (48-87)||(3284995-3285034)
chr4 (61-96)||(3257092-3257127)
chr4 (50-93)||(3288093-3288136)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 3250974 - 3250879
Alignment:
Q  8 ataaataccctttatcctttactcttagtcacagtctaagtaagtgcatgcactccaaacacattggttccttaaaccattttatgctttcctatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3250974 ataaataccctttatcctttactcttagtcacagtctaagtaagtgcatgcactccaaacacattggttccttaaaccattttatgctttcctatg 3250879  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 3271523 - 3271484
Alignment:
Q  48 taagtgcatgcactccaaacacattggttccttaaaccat 87  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  3271523 taagtgcatctactccaaacacattggttccttaaaccat 3271484  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 3285034 - 3284995
Alignment:
Q  48 taagtgcatgcactccaaacacattggttccttaaaccat 87  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  3285034 taagtgcatctactccaaacacattggttccttaaaccat 3284995  T

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Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 3257127 - 3257092
Alignment:
Q  61 tccaaacacattggttccttaaaccattttatgctt 96  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  3257127 tccaaacaccttgattccttaaaccattttatgctt 3257092  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 3288136 - 3288093
Alignment:
Q  50 agtgcatgcactccaaacacattggttccttaaaccattttatg 93  Q
    |||||||||||||||||||| ||| ||||||| || ||||||||    
T  3288136 agtgcatgcactccaaacaccttgattccttacactattttatg 3288093  T

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