View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5682-13 (Length: 148)

Name: Solexa-NF5682-13
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5682-13
Solexa-NF5682-13
[»] chr2 (3 HSPs)
chr2 (58-148)||(14006385-14006475)
chr2 (55-105)||(17458534-17458584)
chr2 (24-52)||(7799083-7799111)
[»] chr3 (3 HSPs)
chr3 (58-114)||(28437353-28437409)
chr3 (59-112)||(1388431-1388484)
chr3 (52-103)||(46435546-46435597)
[»] chr5 (1 HSPs)
chr5 (66-116)||(35966477-35966527)
[»] chr8 (3 HSPs)
chr8 (59-111)||(26654636-26654688)
chr8 (22-55)||(23361695-23361728)
chr8 (24-52)||(45527568-45527596)
[»] chr7 (4 HSPs)
chr7 (55-114)||(35552357-35552415)
chr7 (52-114)||(9043552-9043614)
chr7 (52-98)||(11907462-11907508)
chr7 (22-57)||(22760858-22760893)
[»] chr4 (2 HSPs)
chr4 (52-98)||(29718773-29718819)
chr4 (22-53)||(28635695-28635726)
[»] chr1 (1 HSPs)
chr1 (56-110)||(46423998-46424052)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 5e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 14006385 - 14006475
Alignment:
Q  58 atatcatcttattagttcactaatattataaaataagtatttaaatatctaaatcttcaacggaaagttcatttttaaataaatgcttgtt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14006385 atatcatcttattagttcactaatattataaaataagtatttaaatatctaaatcttcaacggaaagttcatttttaaataaatgattgtt 14006475  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 17458584 - 17458534
Alignment:
Q  55 tttatatcatcttattagttcactaatattataaaataagtatttaaatat 105  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  17458584 tttatattatcttattagttcattaatatcataaaataagtatttaaatat 17458534  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 7799083 - 7799111
Alignment:
Q  24 caataccaccaggacaacccaagtgggtt 52  Q
    |||||||||||||||||||||||||||||    
T  7799083 caataccaccaggacaacccaagtgggtt 7799111  T

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Target: chr3 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 28437353 - 28437409
Alignment:
Q  58 atatcatcttattagttcactaatattataaaataagtatttaaatatctaaatctt 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28437353 atatcattttattagttcactaatatcataaaataagtatttaaatatctaaatctt 28437409  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 1388431 - 1388484
Alignment:
Q  59 tatcatcttattagttcactaatattataaaataagtatttaaatatctaaatc 112  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  1388431 tatcatcttattagttcactaatatcataacataagtatttaaatatctaaatc 1388484  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 46435597 - 46435546
Alignment:
Q  52 taatttatatcatcttattagttcactaatattataaaataagtatttaaat 103  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||| ||||    
T  46435597 taatttatatcttcttattagttcattaatatcataaaagaagtattgaaat 46435546  T

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Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 35966527 - 35966477
Alignment:
Q  66 ttattagttcactaatattataaaataagtatttaaatatctaaatcttca 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35966527 ttattagttcactaatatcataaaataagtatttaaatatctaaatcttca 35966477  T

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Target: chr8 (Bit Score: 45; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 26654636 - 26654688
Alignment:
Q  59 tatcatcttattagttcactaatattataaaataagtatttaaatatctaaat 111  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  26654636 tatcatcctattagttcactaatatcataaaataagtatttaaatatctaaat 26654688  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 23361695 - 23361728
Alignment:
Q  22 gtcaataccaccaggacaacccaagtgggttaat 55  Q
    ||||||||||||||| ||||||||||||||||||    
T  23361695 gtcaataccaccaggtcaacccaagtgggttaat 23361728  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 45527596 - 45527568
Alignment:
Q  24 caataccaccaggacaacccaagtgggtt 52  Q
    |||||||||||||||||||||||||||||    
T  45527596 caataccaccaggacaacccaagtgggtt 45527568  T

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Target: chr7 (Bit Score: 44; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 35552415 - 35552357
Alignment:
Q  55 tttatatcatcttattagttcactaatattataaaataagtatttaaatatctaaatctt 114  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  35552415 tttatatcatcttattagttcactaacatcataaa-taagtatttaaatatctaaatctt 35552357  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 9043614 - 9043552
Alignment:
Q  52 taatttatatcatcttattagttcactaatattataaaataagtatttaaatatctaaatctt 114  Q
    |||| ||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  9043614 taatgtatataatcttattagttcagtaatagcataaaataagtatttaaatatctaaatctt 9043552  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 11907462 - 11907508
Alignment:
Q  52 taatttatatcatcttattagttcactaatattataaaataagtatt 98  Q
    ||||||| |||||||||||||||||||||||| || ||| |||||||    
T  11907462 taatttaaatcatcttattagttcactaatatcatcaaagaagtatt 11907508  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 22760893 - 22760858
Alignment:
Q  22 gtcaataccaccaggacaacccaagtgggttaattt 57  Q
    ||||||||||||||  ||||||||||||||||||||    
T  22760893 gtcaataccaccagaccaacccaagtgggttaattt 22760858  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 29718819 - 29718773
Alignment:
Q  52 taatttatatcatcttattagttcactaatattataaaataagtatt 98  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  29718819 taatttatatcatcttattagttcactaatatcataaaagaagtatt 29718773  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 28635726 - 28635695
Alignment:
Q  22 gtcaataccaccaggacaacccaagtgggtta 53  Q
    |||| |||||||||||||||||||||||||||    
T  28635726 gtcagtaccaccaggacaacccaagtgggtta 28635695  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 46424052 - 46423998
Alignment:
Q  56 ttatatcatcttattagttcactaatattataaaataagtatttaaatatctaaa 110  Q
    |||||||||| ||||| ||||||||||| |||||| || ||||||||||||||||    
T  46424052 ttatatcatcctattaattcactaatatcataaaagaaatatttaaatatctaaa 46423998  T

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