View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-18 (Length: 142)
Name: Solexa-NF5682-18
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-18 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 36066667 - 36066794
Alignment:
| Q |
5 |
agaagataagaatgtgccaatcgctttctcatcattattttcatcttctcctaagttttaatgaatgactctccataccttatttgatgatttaatccca |
104 |
Q |
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| T |
36066667 |
agaagataagaatgtgccaatcgctttctcatcattgttttcatcttctcctaagttttaatgaatgactctccataacttatttgatgatttaatccca |
36066766 |
T |
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| Q |
105 |
ccaatgcataaccttttaaatcatggtc |
132 |
Q |
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| T |
36066767 |
ccaataaataatcttttaaatcatggtc |
36066794 |
T |
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Target: chr6 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 29024082 - 29024137
Alignment:
| Q |
30 |
ttctcatcattattttcatcttctcctaagttttaatgaatgactctccatacctt |
85 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
29024082 |
ttctcatcattattttcatcttctcccaagtttcaatggatgactctccatacctt |
29024137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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