View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5682-2 (Length: 264)
Name: Solexa-NF5682-2
Description: NF5682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5682-2 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 42957639 - 42957396
Alignment:
| Q |
8 |
ttatataattagcttgatcgtaaataataaaaataattaannnnnnncacataaactacttactattagatgtttcgtaaaatcatatatgatttatttt |
107 |
Q |
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| T |
42957639 |
ttatataattagcttgatcataaataataaaattaattaatttttttcacataaactacttactattagatgtttcgtaaaatcatatatgatttatttt |
42957540 |
T |
|
| Q |
108 |
ctcgtatatgttaatgttaagcatataccaatcttaataaataagagtatctatcaaataaatctatagattaaaacttgtaatgcaagtcatgtaagtc |
207 |
Q |
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| T |
42957539 |
ctcgtatatgttaatgttaagcatataccaatcttaataaataagagtatctatcaaataaatctatagattaaaacttgtaatgcaagtcttgtaagtc |
42957440 |
T |
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| Q |
208 |
ccaatatactgtcnnnnnnnggtccaaatataagtagcgcacct |
251 |
Q |
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| T |
42957439 |
ccaatatactgtcaaaaaaaggtccaaatataagtagtgcacct |
42957396 |
T |
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